Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0582 ATGTTTCAGCCCAACATGTTTGATTCTCACCATTTTATGCTGGATATATCCCATAAGACATGCTCTGAGAGTGATTTAGGAAGGACCAGAGATGATGATTACGAGACAAAATCAGGCACGGAGACCATGGAAGTTCCTTCCGGTGGCGACGATGACCAAGATCCCAACCAAAGACCCAAGAGGAAGCGCTACCACCGCCACACACAGCACCAAATACAAGAGATGGAAGCCTTCTTCAAGGAGTGTCCTCACCCAGATGACAAGCAAAGGAAAGAGCTGAGCCATGAGCTTGGGTTGGAGCCTTTACAAATCAAGTTTTGGTTCCAAAACAAGCGTACCCAGATGAAGGCTCAACATGAACGCCATGACAACGCTGTCTTGAAGGCTGAGAATGAAAATCTTCGAGCTGAGAACAGTAGGTACAAGGAAGCACTAAGTAATTCCTCATGTCCCAACTGTGGAGGTCCAGCAGCTCTTGGTGAGATGTCCTTTGACGAGCAGCACTTGAGCATTGAGAATGCTCGTTTAAGAGAAGAGATTGATAGGATATCGGGAATTGCAGCCAAGTATGTTGGAAAACCAGTGACTTCCTACTCTCACCTTTCATCTCATACGGCTTCTCGCTCCTTTGATCTTGGGGTCGGTACCTATGGATCACAGTCAGGCATGTTAGGGGAAATGTATGGAGATAGTAGTGATCTTCTCAGGTCACTCCCAGTTCCTAATGAAGCTGACAAACCCATGATTGTGGAGCTTGCTGTCGCAGCTATGGAGGAACTAACAAGATTGGCTCAGGCTGGGGAACCCTTATGGGTCCCTTCTAGCAACCACGTCTCAAAAGAGATTCTAAATGAAGCTGAATACTTCAGGACTTTCCCTAGGGGAATAGGTCCTAAACCCTTCGGGTTAAGATCTGAAGCTTCAAGGGAATCCGCAGTGGTTATAATGAATCACAATAACCTTGTTGAGATGCTTATGGACGTGAGTCAATGGTCAACTTTGTTTTGCGGCATTGTTTCAAGGGCGATGACACATGAAATCTTATCAACTGGAGTGGCAGGAAACTATAATGGAGCCCTGCAAGTGATGTCAGCTGAGTTCCAGGTCCCTTCACCACTTGTTCCTACACGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCATGCAGATGGGACGTGGGCAGTGGTTGATGTTTCCTTGGATGCTCTTGGTCCTAATGCAATATCAAGAAGCCGAAGAAGGCCCTCTGGATGTGTAATTCAAGAATTGCCAAATGGTTACTCAAAGGTTACATGGATCGAACATGTAGAAGTGGACGATAGAGATGTGCACAATATATATAGACCTTTAGTTATTAATGGCCTTGCCTTTGGAGCTAAACGATGGTTGGCTACATTAGATAGACAATGCGAACGCCTTGCTAGTTCAATGGCCAGCAACATACTAGCCGGAGACCTTTGTGTGATAACCAGTTCGGAGGGACGGAAAAGTATGATGAAGCTGGCAGAAAGAATGGTGATGAGCTTTTGTAGTGGTGTTGGTGCATCTACAGCACATGCATGGACAGTGCTGTCCGGAACAGGTTGTGATGAAGTGAGGGTCATGACCAGAAAGAGTATGGATGATCCAGGTAGACCTCCTGGTGTAGTGCTCAATGCTGCAACTTCTTTCTGGCTTCCAGTTCCTCCCAACCGGGTTTTTCATTTTCTTCGAGACGAAAACTCAAGAAGTAAGTGGGATATTCTCTCCAATGGAGGTCTAGTTCAAGAAGTGGCACACATAGCAAATGGCCGTGATCCTGGCAACTATGTCTCTCTACTTCGTGTCAACAGTGCCAATTCCAGCCAAAGTAACATGCTGATACTTCAAGAAAGTTGCACCGACGCAACAGGCTCCTGCGTAATTTATGCTCCAGTCGATATTGTTGCCATGAATGTAGTCTTCGGTGGTGGGGACCCAGATTATGTTCCCCTCTTGCCCTCTGGCTTTGCCATTCTTCCTGATGGGGCTGCAGGACAAAATGGAGAACCAAATATTCTTGATGTTGGAACTGGAGTTTAA 2061 0.4619 MFQPNMFDSHHFMLDISHKTCSESDLGRTRDDDYETKSGTETMEVPSGGDDDQDPNQRPKRKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSHELGLEPLQIKFWFQNKRTQMKAQHERHDNAVLKAENENLRAENSRYKEALSNSSCPNCGGPAALGEMSFDEQHLSIENARLREEIDRISGIAAKYVGKPVTSYSHLSSHTASRSFDLGVGTYGSQSGMLGEMYGDSSDLLRSLPVPNEADKPMIVELAVAAMEELTRLAQAGEPLWVPSSNHVSKEILNEAEYFRTFPRGIGPKPFGLRSEASRESAVVIMNHNNLVEMLMDVSQWSTLFCGIVSRAMTHEILSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQHADGTWAVVDVSLDALGPNAISRSRRRPSGCVIQELPNGYSKVTWIEHVEVDDRDVHNIYRPLVINGLAFGAKRWLATLDRQCERLASSMASNILAGDLCVITSSEGRKSMMKLAERMVMSFCSGVGASTAHAWTVLSGTGCDEVRVMTRKSMDDPGRPPGVVLNAATSFWLPVPPNRVFHFLRDENSRSKWDILSNGGLVQEVAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDATGSCVIYAPVDIVAMNVVFGGGDPDYVPLLPSGFAILPDGAAGQNGEPNILDVGTGV 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0582 686 FunFam Homeobox-leucine zipper protein GLABRA 2 251 471 - -
Glsi01g0582 686 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 57 680 IPR042160 -
Glsi01g0582 686 Pfam Homeodomain 61 116 IPR001356 GO:0003677
Glsi01g0582 686 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Glsi01g0582 686 Gene3D - 48 134 - -
Glsi01g0582 686 CDD START_ArGLABRA2_like 246 471 - -
Glsi01g0582 686 SMART START_1 251 472 IPR002913 GO:0008289
Glsi01g0582 686 MobiDBLite consensus disorder prediction 22 39 - -
Glsi01g0582 686 CDD homeodomain 60 119 IPR001356 GO:0003677
Glsi01g0582 686 SMART HOX_1 59 122 IPR001356 GO:0003677
Glsi01g0582 686 Coils Coil 112 147 - -
Glsi01g0582 686 SUPERFAMILY Homeodomain-like 46 118 IPR009057 -
Glsi01g0582 686 FunFam Homeobox-leucine zipper protein HDG1 48 134 - -
Glsi01g0582 686 SUPERFAMILY Bet v1-like 243 474 - -
Glsi01g0582 686 ProSiteProfiles START domain profile. 242 475 IPR002913 GO:0008289
Glsi01g0582 686 Pfam START domain 252 472 IPR002913 GO:0008289
Glsi01g0582 686 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Glsi01g0582 686 MobiDBLite consensus disorder prediction 22 69 - -
Glsi01g0582 686 Gene3D - 311 469 IPR023393 -
Glsi01g0582 686 SUPERFAMILY Bet v1-like 493 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0582 Glsi-ChrGlsi01 7391976 7398534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0582 1 672 Homeobox Transcription Factor Family AT4G04890 78.024 0.0 1095
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi01g0582 START 3.3e-53 CL0209