Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0579 ATGGCTACCCAACAACCTCTGCTAAACAATCCCAAAAAATCTCTTTCCAAAACTCTCTGGTTAATTCTATCTGTAGCCGCAATCATAGGCTCATCAGCCCTTATTGCTTCTTATCTGAAGAACAAACCCACCATCTTCTTCAACCTCTCCCTCCCTCCCCACCACCACCATCTCTGTGAGCATGCCCTTGACCAAGCATCATGCTCAGCCCATGTTTCCGAAATAGCCACAAATGATCAGCCCAGTTTCAATTTGCTCCAAACCTTCCTTGTAAAATCAACCTCCCATATCCAGCAAGTTATGGACAAAGCCAAGGCTTCCAAATATCGGATTAATAGTCCCAAGCAGCAAGCAGCTTTGCTTGACTGTGAGGAGCTCATGGACTTCTCCATAGACAGAACTTGGGACTCAGTGGCGGCTCTTATAAAAAACACTACAGAATCCCAGAATGATGCACACTCATGGCTAAGTGCTGTGCTCACTAACCATGAGACTTGCTTGGATGGGCTTGAGGGTTCGGCTAGAACCCTCATGAAGGCTGAGCTCGAGGACTTGAAATCCAGAGCAAGAACCTCTCTGGCTATCCTTGTTGCTATTTTGCCTCAAAAGAGCAACGTTGATGACGATGAGATTGAGCAGCCATTAAATGGAGATTTTCCCTCTTGGGTTTCGAGCAAGGACCGAAGCCTTCTGGAATCTTCGGCTGAGGCAATTGAAGCCAATGTGGTGGTGGCTGAGGATGGGAGTGGAACGTTTAAGACGGTGGCGGAGGCTGTGGCGTCGGCACCGAACAACAGGGAGACGAGGTACGTTATTTATGTGAAGAAGGGAACGTATGAAGAGAATGTAACAATTACTAGCAACAAGAAGAATGTAATGCTCGTTGGTGATGGAATGGATGAGACAATAATCACCGCCAGCATGAATGTTGTGGACGGATCAACCACCTTCAACTCCGCCACTGTCGCTGTTAATGGCGATGGATTTATAGGCCAAGACATCTGGTTTCAAAACACAGCAGGCCCAGAGAAGCACCAAGCAGTGGCACTCCGCGTTAGTGCTGACAAATCTGTCATAAACCGCTGCCGCGTAGATGCCTACCAGGACACCCTTTATCCTCATTCAAACCGACAGTTCTATGGTGACTCCATCATCACCGGCACCATCGACTTCATCTTTGGAAATGCAGCAGTTGTGTTACAGAATTGCAGTATTCAGCCCCGGAAGCCCATGAGTAACCAGTACAACGTAATCACAGCCCAAGGACGCACAGATCCAAATCAGAACACGGGAATTTCCATTCAGCAATGTGATATAACACCAAGCTCAGAGTTGAAGCCTGTCGTGGACTCAGTCCGAACCTATTTGGGCCGCCCATGGAAGGAGTACTCTAGAACTGTTGTGATGCAGTCATATTTGGATGGCTTCATTGACCCAGCAGGATGGGTAGCATGGGATGGCGATTTTGCATTGAGCACATTGTATTATGGAGAGTACATGAACACAGGAGCAGGCGCTGGGACCAGCGAGAGAGTGAAATGGCCTGGTTACCATGTGATTGAAAGTGCTGCAGTGGCAATGCAGTTCACAGTGGCTGAGCTGATTCAAGGTGAGACTTGGTTGAACGACACTGGGGTGGCCTTCATTGAAGGGCTGTAG 1659 0.4822 MATQQPLLNNPKKSLSKTLWLILSVAAIIGSSALIASYLKNKPTIFFNLSLPPHHHHLCEHALDQASCSAHVSEIATNDQPSFNLLQTFLVKSTSHIQQVMDKAKASKYRINSPKQQAALLDCEELMDFSIDRTWDSVAALIKNTTESQNDAHSWLSAVLTNHETCLDGLEGSARTLMKAELEDLKSRARTSLAILVAILPQKSNVDDDEIEQPLNGDFPSWVSSKDRSLLESSAEAIEANVVVAEDGSGTFKTVAEAVASAPNNRETRYVIYVKKGTYEENVTITSNKKNVMLVGDGMDETIITASMNVVDGSTTFNSATVAVNGDGFIGQDIWFQNTAGPEKHQAVALRVSADKSVINRCRVDAYQDTLYPHSNRQFYGDSIITGTIDFIFGNAAVVLQNCSIQPRKPMSNQYNVITAQGRTDPNQNTGISIQQCDITPSSELKPVVDSVRTYLGRPWKEYSRTVVMQSYLDGFIDPAGWVAWDGDFALSTLYYGEYMNTGAGAGTSERVKWPGYHVIESAAVAMQFTVAELIQGETWLNDTGVAFIEGL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0579 552 CDD PMEI-like_4 58 199 - -
Glsi01g0579 552 Gene3D - 235 552 IPR012334 -
Glsi01g0579 552 SUPERFAMILY Pectin lyase-like 237 551 IPR011050 -
Glsi01g0579 552 NCBIfam pectinesterase inhibitor domain 57 183 IPR006501 GO:0004857
Glsi01g0579 552 Pfam Pectinesterase 241 538 IPR000070 GO:0030599|GO:0042545
Glsi01g0579 552 PANTHER PECTINESTERASE 28 542 - -
Glsi01g0579 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 196 IPR035513 -
Glsi01g0579 552 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Glsi01g0579 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 199 IPR035513 -
Glsi01g0579 552 SMART PMEI_2 42 195 IPR006501 GO:0004857
Glsi01g0579 552 FunFam Pectinesterase 235 552 - -
Glsi01g0579 552 Pfam Plant invertase/pectin methylesterase inhibitor 57 195 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0579 Glsi-ChrGlsi01 7285397 7288595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0579 3 552 Carbohydrate Esterase AT1G11580 55.893 0.0 610