Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0578 ATGGCTACCCAACAACCTCTGCTAAACAATCCCAAAAAATCTCTTTCCAAAACTCTCTGGTTAATTCTATCTGTAGCCGCAATCATAGGCTCATCAGCCCTTATTGCTTCTTATCTGAAGAACAAACCCACCATCTTCTTCAACCTCTCCCTCCCTCCCCACCACCACCATCTCTGTGAGCATGCCCTTGACCAAGCATCATGCTCAGCCCATGTTTCCGAAATAGCCACAAATGATCAGCCCAGTTTCAATTTGCTCCAAACCTTCCTTGTAAAATCAACCTCCCATATCCAGCAAGTTATGGACAAAGCCAAGGCTTCCAAATATCGGATTAATAGTCCCAAGCAGCAAGCAGCTTTGCTTGACTGTGAGGAGCTCATGGACTTCTCCATAGACAGAACTTGGGACTCAGTGGCGGCTCTTATAAAAAACACTACAGAATCCCAGAATGATGCACACTCATGGCTAAGTGCTGTGCTCACTAACCATGAGACTTGCTTGGATGGGCTTGAGGGTTCGGCTAGAACCCTCATGAAGGCTGAGCTCGAGGACTTGAAATCCAGAGCAAGAACCTCTCTGGCTATCCTTGTTGCTATTTTGCCTCAAAAGAGCAACGTTGATGACGATGAGATTGAGCAGCCATTAAATGGAGATTTTCCCTCTTGGGTTTCGAGCAAGGACCGAAGCCTTCTGGAATCTTCGGCTGAGGCAATTGAAGCCAATGTGGTGGTGGCTGAGGATGGGAGTGGAACGTTTAAGACGGTGGCGGAGGCTGTGGCGTCGGCACCGAACAACAGGGAGACGAGGTACGTTATTTATGTGAAGAAGGGAACGTATGAAGAGAATGTAACAATTACTAGCAACAAGAAGAATGTAATGCTCGTTGGTGATGGAATGGATGAGACAATAATCACCGCCAGCATGAATGTTGTGGACGGATCAACCACCTTCAACTCCGCCACTGTCGCTGTTAATGGCGATGGATTTATAGGCCAAGACATCTGGTTTCAAAACACAGCAGGCCCAGAGAAGCACCAAGCAGTGGCACTCCGCGTTAGTGCTGACAAATCTGTCATAAACCGCTGCCGCGTAGATGCCTACCAGGACACCCTTTATCCCCATTCAAACCGACAGTTCTATGGTGACTCCTTCATCACCGGCACCGTCGACTTCATCTTTGGAAATGCAGCAGTTGTGTTACAGAAGTGCAGTATTCAGCCCCGGAAGCCCATGAGTAAACAGAACAACATAGTCACAGCCCAAGGACGCACAGATCCAAATCAGAACACGGGAACTTCCATTCAGCAATGTGATATAACACCAAGCTCAGGCTTGAAGCCTGTCGTGGACTCAGTCCGAACCTATTTGGGCCGCCCATGGAAGGAGTACTCTAGAACTGTTGTGATGCAGTCATATTTGGATGGCTTCATTGACCCAGCAGGATGGTTAGAATGGAATGGCGATTTTGCATTGAGCACATTGTATTATGGAGAGTATCAGAACACAGGACCAGGCGCTGGGACCAGCAAGAGAGTGAAATGGCCTGGTTACCATGTGATTAAAAGTGCTGCAGTGGCAATGCAGTTCACGGTGGCTGAGCTGATTCAAGGTGAGACTTGGTTGAAGAACACTGGGGTGGCCTTCATTGAAGGCCTGTAG 1659 0.4816 MATQQPLLNNPKKSLSKTLWLILSVAAIIGSSALIASYLKNKPTIFFNLSLPPHHHHLCEHALDQASCSAHVSEIATNDQPSFNLLQTFLVKSTSHIQQVMDKAKASKYRINSPKQQAALLDCEELMDFSIDRTWDSVAALIKNTTESQNDAHSWLSAVLTNHETCLDGLEGSARTLMKAELEDLKSRARTSLAILVAILPQKSNVDDDEIEQPLNGDFPSWVSSKDRSLLESSAEAIEANVVVAEDGSGTFKTVAEAVASAPNNRETRYVIYVKKGTYEENVTITSNKKNVMLVGDGMDETIITASMNVVDGSTTFNSATVAVNGDGFIGQDIWFQNTAGPEKHQAVALRVSADKSVINRCRVDAYQDTLYPHSNRQFYGDSFITGTVDFIFGNAAVVLQKCSIQPRKPMSKQNNIVTAQGRTDPNQNTGTSIQQCDITPSSGLKPVVDSVRTYLGRPWKEYSRTVVMQSYLDGFIDPAGWLEWNGDFALSTLYYGEYQNTGPGAGTSKRVKWPGYHVIKSAAVAMQFTVAELIQGETWLKNTGVAFIEGL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0578 552 CDD PMEI-like_4 58 199 - -
Glsi01g0578 552 Pfam Pectinesterase 241 538 IPR000070 GO:0030599|GO:0042545
Glsi01g0578 552 Gene3D - 235 552 IPR012334 -
Glsi01g0578 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 199 IPR035513 -
Glsi01g0578 552 NCBIfam pectinesterase inhibitor domain 57 183 IPR006501 GO:0004857
Glsi01g0578 552 PANTHER PECTINESTERASE 28 542 - -
Glsi01g0578 552 SUPERFAMILY Pectin lyase-like 237 551 IPR011050 -
Glsi01g0578 552 Pfam Plant invertase/pectin methylesterase inhibitor 57 195 IPR006501 GO:0004857
Glsi01g0578 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 196 IPR035513 -
Glsi01g0578 552 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Glsi01g0578 552 SMART PMEI_2 42 195 IPR006501 GO:0004857
Glsi01g0578 552 FunFam Pectinesterase 235 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0578 Glsi-ChrGlsi01 7239041 7242239 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0578 3 552 Carbohydrate Esterase AT1G11580 56.250 0.0 613