Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0576 ATGAGGCAGATTTATCAAGAGGAAAAAGATAAAAATGAAAACAAAGAGGAGCAATCTGCTTTAACATGCCTGCAAGTCTATATAAAGTACCATCAAGCGAAGCAAAAATCGCCAACATCTACCAATTCCTTTGTCCACTACAAGATGGCTACCCAACAACCTCTGCTAAACAATCCCAAAAAATCTCTTTCCAAAACTCTCTGGTTAATTCTATCTGTTGCCGCAATCATAGGCTCATCAGCCCTTATCGCTTCTTATCTGAAGAACAAACCCACCATCTTCTTCAACCTCTCCCTCCCTCCCCACCACCACCATCTCTGTGAGCATGCCCTTGACCGAGCATCATGCTCAGCCCATGTCTCCGAAATTGCCACAAATGATCAGCCCAGTTTCAATTTGCTCCAAACCTTCCTTGTAAAATCAGCCTCCCATATCCAGCAAGCTATGGACAAAGCTAAGGCTTCCAAATATCGGATTAATAGTCCCAAGCAGCAAGCAGCTTTGCTTGACTGTGAGGAGCTCATGGACTTCTCCATAGACAGAACTTGGGACTCAGTGGCGGCTCTTATAAAAAACACTACAGAATCCCAGAACGATGCACACTCATGGCTAAGTGCTGTGCTCACAAACCATGAGACTTGCTTGGATGGGCTTGAGGGTTCGGCTAGAACCCTCATGAAGGCTGAGCTCGAGGACTTGAAATCCAGAGCAAGGACCTCTCTGGCTATGCTTGTTGCTATTTTGCCTCAAAAGAGCAACGTCGATGACGATGAGATTGAGCAGCCATTAAATGGAGATTTTCCCTCTTGGGTTTCGAGCAAGGACCGAAGCCTTCTGGAATCTTCGGCTGAGGCAATTGAAGCCAATGTGGTGGTGGCTGAGGATGGGAGTGGAACGTTTAAGACGGTGGCGGAGGCTGTGGCGTCGGCACCGAACAACGGGAAGACGAGGTACGTTATTTATGTGAAGAAGGGAACGTATAAAGAGAATGTAATAATTGATAAGAAGAAGAAGAATGTAACGCTCGTTGGTGATGGAATGGATGCGACAATAATCACTGGCAGCTTGAATGTTGTGGACGGATCAACCACCTTCAACTCCGCCACTGTCGCTGTTAATGGCGATGGATTTATAGGCCAAGACATCTGGTTTCAAAACACAGCAGGCCCAGAGAAGCACCAAGCAGTGGCACTCCGCGTTAGTGCTGACAAATCTGTCATAAACCGCTGCCGCGTAGATGCCTACCAGGACACCCTTTATCCCCATTCAAACCGGCAGTTCTATGGTGACTCCTTCATCACCGGCACCGTCGACTTCATCTTTGGAAATGCAGCAGTTGTGTTACAGAAGTGCAGTATTCAGCCCCGGAAGCCCATGAGTAAACAGAACAACATAGTCACAGCCCAAGGACGCACAGATCCAAATCAGAACACGGGAACTTCCATTCAACAATGTGATATAACACCAAGCTCAGGCTTGAAGCCTGTCGTGGACTCAGTCCGAACCTATTTGGGCCGCCCATGGAAGGAGTACTCTAGAACTGTTGTGATGCAGTCATATTTGGATGGCTTCATTGACCCAGCAGGATGGTTAGAATGGAATGGCGATTTTGCATTGAGCACATTGTATTATGGAGAGTATCAGAACACAGGACCAGGCGCTGGGACCAGCAAGAGAGTGAAATGGCCTGGTTACCATGTGATTAAAAGTGCTGCAGTGGCAATGCAGTTCACGGTGGCTGAGCTGATTCAAGGTGAGACTTGGTTGAAGAACACTGGGGTGGCCTTCATTGAAGGCCTGTAG 1803 0.4753 MRQIYQEEKDKNENKEEQSALTCLQVYIKYHQAKQKSPTSTNSFVHYKMATQQPLLNNPKKSLSKTLWLILSVAAIIGSSALIASYLKNKPTIFFNLSLPPHHHHLCEHALDRASCSAHVSEIATNDQPSFNLLQTFLVKSASHIQQAMDKAKASKYRINSPKQQAALLDCEELMDFSIDRTWDSVAALIKNTTESQNDAHSWLSAVLTNHETCLDGLEGSARTLMKAELEDLKSRARTSLAMLVAILPQKSNVDDDEIEQPLNGDFPSWVSSKDRSLLESSAEAIEANVVVAEDGSGTFKTVAEAVASAPNNGKTRYVIYVKKGTYKENVIIDKKKKNVTLVGDGMDATIITGSLNVVDGSTTFNSATVAVNGDGFIGQDIWFQNTAGPEKHQAVALRVSADKSVINRCRVDAYQDTLYPHSNRQFYGDSFITGTVDFIFGNAAVVLQKCSIQPRKPMSKQNNIVTAQGRTDPNQNTGTSIQQCDITPSSGLKPVVDSVRTYLGRPWKEYSRTVVMQSYLDGFIDPAGWLEWNGDFALSTLYYGEYQNTGPGAGTSKRVKWPGYHVIKSAAVAMQFTVAELIQGETWLKNTGVAFIEGL 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0576 600 PANTHER PECTINESTERASE 76 590 - -
Glsi01g0576 600 SUPERFAMILY Pectin lyase-like 285 599 IPR011050 -
Glsi01g0576 600 CDD PMEI-like_4 114 247 - -
Glsi01g0576 600 SMART PMEI_2 90 243 IPR006501 GO:0004857
Glsi01g0576 600 Pfam Pectinesterase 289 586 IPR000070 GO:0030599|GO:0042545
Glsi01g0576 600 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Glsi01g0576 600 Gene3D - 283 600 IPR012334 -
Glsi01g0576 600 FunFam Pectinesterase 283 600 - -
Glsi01g0576 600 NCBIfam pectinesterase inhibitor domain 105 229 IPR006501 GO:0004857
Glsi01g0576 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 104 247 IPR035513 -
Glsi01g0576 600 Pfam Plant invertase/pectin methylesterase inhibitor 105 243 IPR006501 GO:0004857
Glsi01g0576 600 ProSitePatterns Pectinesterase signature 1. 314 333 IPR018040 -
Glsi01g0576 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 105 244 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0576 Glsi-ChrGlsi01 7191863 7195929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0576 51 600 Carbohydrate Esterase AT1G11580 56.786 0.0 619