Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0575 ATGGCTACCCAAGAACCTCTCCTAAACAATCCCAAAAGATCTCTTCCCAAAACTCCTTGGTTAATTCTCTCTGTAGCTGCAATCATAGGCTTATCAGCCCTTATCGCTTCTTATCTGAAGAACAAACCCACCATCTTCTTCAACCTCTCCCTCCCTCCCCACCACCACCATCTCTGTGAGCATGCCCTTGAACAAGCATCATGCTCAGCCCATGTCTCCGAAATAGCGACAAATGATCAGCCCAGTTTCAATTTGCTCCTAACCTTCCTTGTAAAATCAACCTCCCATATCCAGCAAGCTATGGGCAAAGCCAAGATTTTCAAATATCGGATTAATAGTCCCAAGCAGCAAGCAGCTTTGCTTGACTGTGAGGAGCTCATGGACTTGACCGAAGCCTTCTGGAATCTTCGGCTGAGGCAATTGAAGCCAATGTCGTGGTGGCTAAGGATGGGAGTGGCGGAGGCTGTGGCGTCGGCGCCGAACAACGGGAAGACGAGGTACGTTATTTACGTGAAGACGGGAACGTATAAAGAGAATGTAATAATTGATAAGAAGAAGAAGAATGTAATGCTCGTAGGTGTTGGAATGGATGCGACAATAATCACTGGCAGCTTGCATGTTGTGGACGGATCAACCACCTTCAACTCCGCCACTGTCGCTGTTAATGGTGATGGATTTGTAGGCCAAGACATCTGGTTCCAAAACACAGCAGGCCCAGAGAAGCATCAAGCAGTGGAACTCCGCGTTAGTTCTGACAAATCTGTCATAACCCTTTATGCCCAGTCAAACCGACAGTTCTATGGTGACTCCTTCATCACCGGCACCATCGACTTCATCTTTGGAAATGCAGCAGTTGTATTACAGAGTGCAGTATTGAGCCCCGGAAGCCCATGA 894 0.4765 MATQEPLLNNPKRSLPKTPWLILSVAAIIGLSALIASYLKNKPTIFFNLSLPPHHHHLCEHALEQASCSAHVSEIATNDQPSFNLLLTFLVKSTSHIQQAMGKAKIFKYRINSPKQQAALLDCEELMDLTEAFWNLRLRQLKPMSWWLRMGVAEAVASAPNNGKTRYVIYVKTGTYKENVIIDKKKKNVMLVGVGMDATIITGSLHVVDGSTTFNSATVAVNGDGFVGQDIWFQNTAGPEKHQAVELRVSSDKSVITLYAQSNRQFYGDSFITGTIDFIFGNAAVVLQSAVLSPGSP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0575 297 Gene3D - 156 295 IPR012334 -
Glsi01g0575 297 ProSitePatterns Pectinesterase signature 2. 272 281 IPR033131 -
Glsi01g0575 297 ProSitePatterns Pectinesterase signature 1. 163 182 IPR018040 -
Glsi01g0575 297 PANTHER PECTINESTERASE 152 290 - -
Glsi01g0575 297 SUPERFAMILY Pectin lyase-like 152 292 IPR011050 -
Glsi01g0575 297 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 155 IPR035513 -
Glsi01g0575 297 Pfam Pectinesterase 152 292 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0575 Glsi-ChrGlsi01 7169376 7172140 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0575 152 297 Carbohydrate Esterase AT1G11580 66.667 8.05e-64 209