Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0573 ATGAAAAAAAAAAAAAAGGAGCAATCTGCTTTAACATGTCTGCAAGTCTATATAAAGGACCATCAAGCAAAGCAAAAATCGCCAACATCTGCCATATCCTTTGTCCACTACACGATGGCTACCCAACAACCTCTGCTAAACAATCCCAAAAAATCTCTTTCCAAAACTCTTTGGTTAATTCTCTCTGTAGCCGCAATCATAGGCTCATCAGCCCTTATCGCCTCTTATATAAAGAACAAACCCACCATCTTCTTCAACCTCTCCCTCCCTCCCCACCACCACCATCTCTGTGAGGATACCCTTGAACAAGGATCATGCTCAGCCCATGTCTCCGAAATAGCCGCAAAAGATCAGCCCAGTTTCAGTTTGCTCCAAACCTTCCTTGTAAAATCAACCTCCTATATCCAGCAAGCTTTGGACAAAGCCAAGGCTTTCAAATATCGGATTAATAGCTCCAAGCAGCAAGCAGCTTTGCTTGACTGTGAGGAGCTCATGGACTTTTCCATAGATAGAACTTGGGACTCAGTGGCAGCTCTTATAAAAAACACTACAGAATCCCAGAACGATGCACACTCATGGCTAAGTGCTGTGCTCACTAACCATGAGACTTGCTTGGATGGGCTTGAGGGTTCGGCTAGAACCCTCATGGAAGCTGAACTCGAGGACTTGAAATCCAGAGCAAGAACCTCTCTGGCTATGCTTGTTGCTATTTTGCCTCAAAAGAACAACGTTGACTATGAGATTGAGCAGCCATTAAATGGAGATTTTCCCTCTTGGGTTTCGAGCAGGGACCGAAGCCTTCTGGAATCTTCGGCTGAGGCAATTGAAGCCAATGTCGTGGTGGCTAAGGATGGGAGTGGAAGGTTTAAGACGGTGGCGGAGGCTGTGGCGTCGGCACCGAACAACGGGAAGACGAGGTACGTTATTTACGTGAAGACGGGAACGTATAAAGAGAATGTAATAATTGATAAGAAGAAGCAGAATGTAATGCTCATCGGTGATGGAAAGGATGCGACAATAATCACCGGCAGCTTGAATTATGTGGACGGATCAACCACCTTCAACTCCGCCACCGTCGCTGTTAATGTGGTGTTACAGAAGTGCAGTATTCAGCCCCGGAAGCCCATGAGTAACCAGTACAACACGGTCACAGCCCAAGGGCGCACATCTCTAAATCAGAACACAGGGACTTCTATTCAGCAATTGGCAATGCAGTTCACAGTGGCTGAGCTGATTCAAGGTGAGACTTGGTTGAAGAACACTGGGGTGGCCTTCATTAAAGGGCTGTAG 1290 0.4643 MKKKKKEQSALTCLQVYIKDHQAKQKSPTSAISFVHYTMATQQPLLNNPKKSLSKTLWLILSVAAIIGSSALIASYIKNKPTIFFNLSLPPHHHHLCEDTLEQGSCSAHVSEIAAKDQPSFSLLQTFLVKSTSYIQQALDKAKAFKYRINSSKQQAALLDCEELMDFSIDRTWDSVAALIKNTTESQNDAHSWLSAVLTNHETCLDGLEGSARTLMEAELEDLKSRARTSLAMLVAILPQKNNVDYEIEQPLNGDFPSWVSSRDRSLLESSAEAIEANVVVAKDGSGRFKTVAEAVASAPNNGKTRYVIYVKTGTYKENVIIDKKKQNVMLIGDGKDATIITGSLNYVDGSTTFNSATVAVNVVLQKCSIQPRKPMSNQYNTVTAQGRTSLNQNTGTSIQQLAMQFTVAELIQGETWLKNTGVAFIKGL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0573 429 Pfam Pectinesterase 278 362 IPR000070 GO:0030599|GO:0042545
Glsi01g0573 429 Pfam Pectinesterase 363 405 IPR000070 GO:0030599|GO:0042545
Glsi01g0573 429 Pfam Plant invertase/pectin methylesterase inhibitor 95 232 IPR006501 GO:0004857
Glsi01g0573 429 NCBIfam pectinesterase inhibitor domain 97 213 IPR006501 GO:0004857
Glsi01g0573 429 CDD PMEI-like_4 105 237 - -
Glsi01g0573 429 SMART PMEI_2 92 233 IPR006501 GO:0004857
Glsi01g0573 429 PANTHER PECTINESTERASE 363 404 - -
Glsi01g0573 429 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 95 234 IPR035513 -
Glsi01g0573 429 ProSitePatterns Pectinesterase signature 1. 303 322 IPR018040 -
Glsi01g0573 429 Gene3D - 272 363 IPR012334 -
Glsi01g0573 429 Gene3D Invertase/pectin methylesterase inhibitor family protein 94 237 IPR035513 -
Glsi01g0573 429 SUPERFAMILY Pectin lyase-like 274 427 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0573 Glsi-ChrGlsi01 7134871 7137438 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0573 341 401 Carbohydrate Esterase AT1G11580 45.902 9.07e-07 49.3