LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi01g0572	ATGAGTAAACAAAACAACATGGTCACGGCCCAAGGACGAATAGATCCAAATCAGAACACAGGGACTTTCTATTCAGTAATAACACCGAGCTCAGACCTGAAGCCCATCGTGGGCTCAGTCCGAACCTATTTGGGCTGTCCATGGAAGAACTTCTCTAGAATTGTTACATTGTATTGTGGAGAGTACATAAACAGAGGACCGGGTGCTGGGACCAGCCAGAGAGTGAAATGGCCTGGTTACCACGTGAGTAAAAGTGTTGCAGAGGCAAAGAAGTTCACAGTGGCTGAGCTAATTCAAGGTGGGTCTTGTTTGGAGAGCACTGTGGTGGCCTTCATTGAAGGTCTGTAG	348	0.4741	MSKQNNMVTAQGRIDPNQNTGTFYSVITPSSDLKPIVGSVRTYLGCPWKNFSRIVTLYCGEYINRGPGAGTSQRVKWPGYHVSKSVAEAKKFTVAELIQGGSCLESTVVAFIEGL	115

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi01g0572	115	Pfam	Pectinesterase	1	57	IPR000070	GO:0030599\|GO:0042545
	Glsi01g0572	115	Gene3D	-	1	115	IPR012334	-
	Glsi01g0572	115	PANTHER	PECTINESTERASE	1	102	-	-
	Glsi01g0572	115	SUPERFAMILY	Pectin lyase-like	3	114	IPR011050	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi01g0572	Glsi-ChrGlsi01	7106874	7107334	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi01g0572	1	115	Carbohydrate Esterase	AT3G49220	48.592	1.96e-33	120

Showing 1 to 1 of 1 entries