Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi01g0572 | ATGAGTAAACAAAACAACATGGTCACGGCCCAAGGACGAATAGATCCAAATCAGAACACAGGGACTTTCTATTCAGTAATAACACCGAGCTCAGACCTGAAGCCCATCGTGGGCTCAGTCCGAACCTATTTGGGCTGTCCATGGAAGAACTTCTCTAGAATTGTTACATTGTATTGTGGAGAGTACATAAACAGAGGACCGGGTGCTGGGACCAGCCAGAGAGTGAAATGGCCTGGTTACCACGTGAGTAAAAGTGTTGCAGAGGCAAAGAAGTTCACAGTGGCTGAGCTAATTCAAGGTGGGTCTTGTTTGGAGAGCACTGTGGTGGCCTTCATTGAAGGTCTGTAG | 348 | 0.4741 | MSKQNNMVTAQGRIDPNQNTGTFYSVITPSSDLKPIVGSVRTYLGCPWKNFSRIVTLYCGEYINRGPGAGTSQRVKWPGYHVSKSVAEAKKFTVAELIQGGSCLESTVVAFIEGL | 115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi01g0572 | 115 | Pfam | Pectinesterase | 1 | 57 | IPR000070 | GO:0030599|GO:0042545 | |
| Glsi01g0572 | 115 | Gene3D | - | 1 | 115 | IPR012334 | - | |
| Glsi01g0572 | 115 | PANTHER | PECTINESTERASE | 1 | 102 | - | - | |
| Glsi01g0572 | 115 | SUPERFAMILY | Pectin lyase-like | 3 | 114 | IPR011050 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi01g0572 | Glsi-ChrGlsi01 | 7106874 | 7107334 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi01g0572 | 1 | 115 | Carbohydrate Esterase | AT3G49220 | 48.592 | 1.96e-33 | 120 |