Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0570 ATGGCTACCCAACAACCTCTGCTAAACAATCCCAGAAAATCTCTTCCCAAAACTCTTTGGTTAATTCTCTCTGTAGCCGCAATCACAAGCTCATCAGCCCTTCTCGCTTCTTATCTCAAGAACTACCCCACCATCTTCTTCAACCTCTCCCTCCCTCCCCACCATCGCCATCTCTGCGAGCATGCCATTGACAGATCATCATGCTCAGCCCATGTCTCAGAAATAGCCACGAAAGATCGCCACAGTTTCCATTTGCTCCAAACCTTCCTTGTCAAATCAACCTCCCATATCCAGCAAGCTATGGACAAGGCTAAGGCTTTCAAATATCGGATTAATAGTCCCAGGCAGCAAGCAGCTTTGCTTGACTGTGAGGAGCTCATGGACTTGTCCATAGACAGAGTTTGGGACTCAATGGTGGCTCTTGCCCAAAACACTACAGAATCCCAGAACGATGCACACTCATGGCTAAGTGCTGTGCTCACTAACCATGCCACTTGCTTGGATGGGCTTAAGGGTTCGGCTAGAACCCTAATGGAGGCTGAGCTCGAGGACTTGAAATCCAGAGCAAGAACCTCTCTGGCTATATTTGTTGCTATTTTGCCTAAAAATAACAACGTTGACCATGAGATTGAGAAGCCATTAAATGGGGATTTTCCCTCTTGGGTTTCGGGCAAGGACCGAAGGCTTCTGGAATCTTCGGCCGAGGCAATTAAAGCCAATGTCGTGGTGGCTAAGGATGGGAGTGGAAGGTTTAAGACAGTGGCGCAGGCCGTGGAGTCGGCACCGGACAACGGGAAGACGAGATACGTTATTTATGTGAAGAAGGGAAAGTATAAAGAGAATGTAGAAATTGGTAAGAAGAAGAAGAATGTAATGCTAGTCGGTGATGGAATGGATGCGACAATAATCATCGGCAGCTTGAATGTTGTGGACGGATCAACCACCTTCAAGTCCGCCACTGTCGCTGCTGTTGGTGATGGATTTATAGCCCAAGATATCTGGTTCCAAAACACAGCAGGTCCAGAGAAGCACCAAGCAGTGGCACTCCGTGTCGGTGCCGACCAATCTGTCATAAACCGTTGCCGCATAGATGCTTTCCAAGACACCCTTTATGCTCACTCAAACCGACAGTTCTACCGTGACTCCTTCATCACTGGCACCGTCGACTTCATCTTTGGAAATGCGGCAGTTGTGTTACAGAAGTGCAATCTTGAGCCCCGGAGGCCCATGAGTAAGCAGAACAACATGGTCACAGCCCAAGGACGCGAAGATCCAAATCAAAACACAGGGACTTCTATTCAGCAATGTGATATAACACCAAGCTCAACCCTGAAGCCTGTTGTTGGCTCGTTCCGAACCTATTTGGGTCGCCCATGGAAGGCCTACTCTAGAACTGTTGTGATGCAGTCATTTTTGGATAGCTTCATTGACCCAGCAGGATGGGCCCCATGGGATGGCACTTTTGCATTGAAGACATTGTATTATGGAGAGTACCGGAACAGAGGACCAGGTGCCGGAACCAGAAAGAGAGTGAAATGGCCAGGTTACCATGTGATTAAAAGTCCTGCAGAGGCAACGAAGTTCACAGTGGCTGAGCTAATTCAAGGTGGGTTTTGGTTGAAGGACACTGGGGTAGCCTTCATTGAAGGGCTGTAG 1656 0.4843 MATQQPLLNNPRKSLPKTLWLILSVAAITSSSALLASYLKNYPTIFFNLSLPPHHRHLCEHAIDRSSCSAHVSEIATKDRHSFHLLQTFLVKSTSHIQQAMDKAKAFKYRINSPRQQAALLDCEELMDLSIDRVWDSMVALAQNTTESQNDAHSWLSAVLTNHATCLDGLKGSARTLMEAELEDLKSRARTSLAIFVAILPKNNNVDHEIEKPLNGDFPSWVSGKDRRLLESSAEAIKANVVVAKDGSGRFKTVAQAVESAPDNGKTRYVIYVKKGKYKENVEIGKKKKNVMLVGDGMDATIIIGSLNVVDGSTTFKSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSFITGTVDFIFGNAAVVLQKCNLEPRRPMSKQNNMVTAQGREDPNQNTGTSIQQCDITPSSTLKPVVGSFRTYLGRPWKAYSRTVVMQSFLDSFIDPAGWAPWDGTFALKTLYYGEYRNRGPGAGTRKRVKWPGYHVIKSPAEATKFTVAELIQGGFWLKDTGVAFIEGL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0570 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 199 IPR035513 -
Glsi01g0570 551 PANTHER PECTINESTERASE 28 541 - -
Glsi01g0570 551 Pfam Pectinesterase 240 536 IPR000070 GO:0030599|GO:0042545
Glsi01g0570 551 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Glsi01g0570 551 CDD PMEI-like_4 58 199 - -
Glsi01g0570 551 NCBIfam pectinesterase inhibitor domain 58 175 IPR006501 GO:0004857
Glsi01g0570 551 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Glsi01g0570 551 FunFam Pectinesterase 234 551 - -
Glsi01g0570 551 Pfam Plant invertase/pectin methylesterase inhibitor 56 195 IPR006501 GO:0004857
Glsi01g0570 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 196 IPR035513 -
Glsi01g0570 551 Gene3D - 234 551 IPR012334 -
Glsi01g0570 551 SUPERFAMILY Pectin lyase-like 235 550 IPR011050 -
Glsi01g0570 551 SMART PMEI_2 50 195 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0570 Glsi-ChrGlsi01 7098021 7100461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0570 3 551 Carbohydrate Esterase AT1G11580 57.603 0.0 635