Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0568 ATGAAATCAGCCTCTCACATTTGCAAAGCTATGAAAAAAGCTAATCTTATAAAGCGGGGGATAAATAGTTCGAGGGACCATGAAGCTTTAACTGATTGTGAGAATCTTCTAGACTTTTCCATGGATAGGGTTCGAGGCTCAATGGTGGCTCTTACAAATAAGAGCACCGAATCCCAACATGATGCACACACATGGCTAAGTAGTGTACTCGACTATCTTGTCACCTGCTTAGATGGGATCGAGGGGTCAGCTCTGTTAGGAATCCAACAAGCTCCAGCCCTCCTGGAGCCAGAGCTCGAGGACTTGATATCAAGAGCCAAAACTTCTCTAGACATATTTGTTGCTATTTTCCCACAAAAGGATGTCCTTATTGATCAACCATTATTGAATGTTATTGGGGATTTTCCCTCTTGGCTGACAATCAGTGATCAGAAGCTTCTAGAGTCTTTGCCCAAGGATATCAAAGCCAATGTTGTGGTGGCTCAGGATGGGAGCGGCCACTTCAGGACTATGAATGAGGCTGTGGCATCGGCACCCAACAATGGTAAGACAAGGTATGTTATTTTTGTAAAGAAGGGGACGTACGTAGAACAGGTTTATATCGGCAAAACAAAAACGAATATGATGCTGGTCGGAGAGGGAATGAAGGCAACAATAATCACTGGCAGCTTGAATGCTGTGGACGGAAAATCAATCATGCAGTCTGGTACTGTTGCTTGTGATGGTGATGGATTTATAGCCCAAGACCTCACTATCAATAACACAGCAGTACCCCAGAAGCACCAAGCAGTGGCGCTCCGTGTTATCGGTCCATCATAA 819 0.4457 MKSASHICKAMKKANLIKRGINSSRDHEALTDCENLLDFSMDRVRGSMVALTNKSTESQHDAHTWLSSVLDYLVTCLDGIEGSALLGIQQAPALLEPELEDLISRAKTSLDIFVAIFPQKDVLIDQPLLNVIGDFPSWLTISDQKLLESLPKDIKANVVVAQDGSGHFRTMNEAVASAPNNGKTRYVIFVKKGTYVEQVYIGKTKTNMMLVGEGMKATIITGSLNAVDGKSIMQSGTVACDGDGFIAQDLTINNTAVPQKHQAVALRVIGPS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0568 272 CDD PMEI-like_4 2 116 - -
Glsi01g0568 272 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 116 IPR035513 -
Glsi01g0568 272 Pfam Pectinesterase 157 268 IPR000070 GO:0030599|GO:0042545
Glsi01g0568 272 ProSitePatterns Pectinesterase signature 1. 182 201 IPR018040 -
Glsi01g0568 272 Gene3D - 151 271 IPR012334 -
Glsi01g0568 272 PANTHER PECTINESTERASE 6 268 - -
Glsi01g0568 272 SUPERFAMILY Pectin lyase-like 155 270 IPR011050 -
Glsi01g0568 272 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 5 83 IPR035513 -
Glsi01g0568 272 SMART PMEI_2 3 112 IPR006501 GO:0004857
Glsi01g0568 272 Pfam Plant invertase/pectin methylesterase inhibitor 4 88 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0568 Glsi-ChrGlsi01 7020284 7026729 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0568 22 268 Carbohydrate Esterase AT1G11580 53.386 5.65e-82 255