Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0566 ATGGCTACCCATCTACCTCTGCTGGACAAACCCCAAAAATCTCTCCCCAAAACTGTCTGGCTACTTCTCTCCTTAGTTGCTATCTTAACTCCATCAGCTCTTATGGTTTCTTACGTGATCAAACCCTACTTCTTCTTCAAGCTCTCCCTGCCTCACCATGTCTGCAAACAAGCCTGTGACCAAGAAACATGCATAGCCCATGTCTCAGAATTAGTAGTCAAAGGATCTATATTCACTACAAAAAATGTTGAGTTATCCTTACTCCGTTCCTTCTTAATGACATCCACCTCTCACATTGGCAAAGCTATGAACAAAGTTAATCTTATAAGAAAGGGGATAAATAGTCCGAAGGAGCATGAAGCTTTAACTGATTGTGAGAAGCTTCTAGGCTTCTCCATGGCCAGGGTTCGAGGCTCTATGGTGGCTCTTACTAATAAGACCACCGAATCCCAACATGATGCACACACATGGCTAAGTAGTGTACTCGACTATCATGTCACCTGCTTGGATGGGCTCGAGGGGTCAGCTCGAGCCCTCCTGGAGCCTGAGATCGAGGACTTGATATCAAGAGCCAAAACTTCTCTAGACATATTTGTTGCTATTTTCCCACAAAAGGATGTCCTTATTGATCAACCATTATTGAATGTCATTAGGGATTTTCCCTCTTGGGAGACAATCAGGGATCGGAATCTTCTAGAGTCTTTGCCTGAGGATATCAAAGCCAATGTTGTGGTGGCTCTGGATGGGAGCGGCCACTTCAGGACTGTGAATGAGGCTGTGGCATCGGCACCCAATAATGGTAAGACAAGGTATGTTATTTTTGTAAAGAAGGGGACGTACGAAGAACAGGTTTATATCGGCAAAACAAAAACGAATGTGATGCTGGTCGGAGAGGGAATGAAGGCAACAATAATCACTGGCAGCTTGAATGCCGTGGACGGAAAATCAATCATGCAGTCTGGTACTGTTGCTTGTGATGGTGATGGATTTATAGCCCAAGACCTGACTATCATTAACTCAGCAGGACCCCAGAAGCACCAAGCAGTGGCGCTCCGTGTTAACGCCGATCGATCCATCATAAACCGCTGCCTCATTGATGGCTATCAAGACACACTCTACGCTCAGTGCCACAGGCAGTTCTACCGTGACAGCATAATCAGAGGTACCGTTGACTTCATCTGCGGAAATGCAGCTGTTGTGCTCCAGAAGTGCTCTATTGTAGCCAAAAAGCCCATGCCTGGCCAAAAGAACATGGTAACTTCCCAACAACGACTCTACCCAAAGCAAAACACAGGGACTTCGATTCAGCTATGTCAGATAGAACCAACCAAGCAACTTGCGCAAGCCATAAGTTCATTCCCTACCTTTCTGGGTCGTCCATGA 1383 0.4591 MATHLPLLDKPQKSLPKTVWLLLSLVAILTPSALMVSYVIKPYFFFKLSLPHHVCKQACDQETCIAHVSELVVKGSIFTTKNVELSLLRSFLMTSTSHIGKAMNKVNLIRKGINSPKEHEALTDCEKLLGFSMARVRGSMVALTNKTTESQHDAHTWLSSVLDYHVTCLDGLEGSARALLEPEIEDLISRAKTSLDIFVAIFPQKDVLIDQPLLNVIRDFPSWETIRDRNLLESLPEDIKANVVVALDGSGHFRTVNEAVASAPNNGKTRYVIFVKKGTYEEQVYIGKTKTNVMLVGEGMKATIITGSLNAVDGKSIMQSGTVACDGDGFIAQDLTIINSAGPQKHQAVALRVNADRSIINRCLIDGYQDTLYAQCHRQFYRDSIIRGTVDFICGNAAVVLQKCSIVAKKPMPGQKNMVTSQQRLYPKQNTGTSIQLCQIEPTKQLAQAISSFPTFLGRP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0566 460 SUPERFAMILY Pectin lyase-like 240 460 IPR011050 -
Glsi01g0566 460 Gene3D - 236 460 IPR012334 -
Glsi01g0566 460 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 203 IPR035513 -
Glsi01g0566 460 CDD PMEI-like_4 82 201 - -
Glsi01g0566 460 Pfam Plant invertase/pectin methylesterase inhibitor 51 179 IPR006501 GO:0004857
Glsi01g0566 460 NCBIfam pectinesterase inhibitor domain 52 177 IPR006501 GO:0004857
Glsi01g0566 460 SMART PMEI_2 46 197 IPR006501 GO:0004857
Glsi01g0566 460 FunFam Putative pectinesterase 57 239 438 - -
Glsi01g0566 460 PANTHER PECTINESTERASE 34 460 - -
Glsi01g0566 460 Pfam Pectinesterase 242 460 IPR000070 GO:0030599|GO:0042545
Glsi01g0566 460 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 197 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0566 Glsi-ChrGlsi01 6990594 6992483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0566 3 460 Carbohydrate Esterase AT1G11580 47.863 4.28e-138 407