Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0560 ATGGAGGGTGACGAAAACAACAAAAGCCCACTTGCAATAAACTCGGCCCGAGGAGCCTTGTCTCTTCGCATTTCAGTTTCTTTACCTTTCGTCGCAGAGAAAGCTTCTCACAACTCCTTCAAGATGCAAATCTTCGTTAAGACCCTCACCGGTAAGACCATCACTCTCGAGGTCGAGAGCTCTGACACCATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCACCTGACCAGCAACGTCTCATCTTCGCCGGCAAGCAACTTGAGGACGGTCGTACCCTTGCCGACTACAATATTCAAAAGGAGTCCACTCTCCACCTCGTCCTCCGTCTCCGTGGTGGTATGCAGATATTCGTTAAGACTCTCACCGGCAAGACCATCACCCTGGAGGTCGAGAGCTCTGACACTATTGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCAGATCAGCAGAGGTTGATCTTCGCCGGCAAGCAACTCGAAGATGGTCGTACCTTGGCCGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTTCGTCTCCGTGGTGGCATGCAAATCTTCGTCAAGACCCTCACAGGGAAAACCATCACCCTTGAGGTCGAGAGCTCTGACACCATTGACAATGTGAAGGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAACAGAGGCTTATCTTCGCTGGGAAGCAGCTTGAGGATGGCCGGACCTTGGCTGACTATAACATCCAGAAGGAGTCAACTCTCCACCTGGTTTTGCGTCTCCGTGGTGGTATGCAGATTTTCGTGAAGACACTTACCGGCAAGACCATCACACTCGAGGTTGAGAGTTCTGACACTATTGACAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGAGGTTGATTTTTGCTGGGAAGCAGCTCGAAGACGGACGCACCCTTGCAGACTACAATATTCAGAAGGAGTCAACTCTTCACCTTGTCCTTCGTCTCAGGGGAGGCATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATAACTCTGGAGGTCGAGAGTTCCGATACTATTGACAATGTCAAGGCGAAGATTCAGGATAAGGAGGGGATCCCACCAGACCAGCAGAGGCTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGGACTCTTGCTGATTATAATATTCAGAAGGAGTCCACCCTTCACCTGGTGCTGCGTCTTCGTGGTGGGAACTAA 1269 0.5091 MEGDENNKSPLAINSARGALSLRISVSLPFVAEKASHNSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0560 422 SMART ubq_7 118 189 IPR000626 GO:0005515
Glsi01g0560 422 SMART ubq_7 194 265 IPR000626 GO:0005515
Glsi01g0560 422 SMART ubq_7 270 341 IPR000626 GO:0005515
Glsi01g0560 422 SMART ubq_7 346 417 IPR000626 GO:0005515
Glsi01g0560 422 SMART ubq_7 42 113 IPR000626 GO:0005515
Glsi01g0560 422 ProSitePatterns Ubiquitin domain signature. 68 93 IPR019954 -
Glsi01g0560 422 Gene3D - 270 345 - -
Glsi01g0560 422 Gene3D - 119 193 - -
Glsi01g0560 422 Gene3D - 34 118 - -
Glsi01g0560 422 Gene3D - 346 422 - -
Glsi01g0560 422 Gene3D - 194 269 - -
Glsi01g0560 422 SUPERFAMILY Ubiquitin-like 269 345 IPR029071 -
Glsi01g0560 422 ProSitePatterns Ubiquitin domain signature. 220 245 IPR019954 -
Glsi01g0560 422 ProSiteProfiles Ubiquitin domain profile. 270 345 IPR000626 GO:0005515
Glsi01g0560 422 PANTHER UBIQUITIN 194 271 - -
Glsi01g0560 422 ProSiteProfiles Ubiquitin domain profile. 194 269 IPR000626 GO:0005515
Glsi01g0560 422 FunFam Polyubiquitin 3 270 345 - -
Glsi01g0560 422 SUPERFAMILY Ubiquitin-like 192 269 IPR029071 -
Glsi01g0560 422 CDD Ubl_ubiquitin 270 345 - -
Glsi01g0560 422 ProSiteProfiles Ubiquitin domain profile. 346 421 IPR000626 GO:0005515
Glsi01g0560 422 FunFam Polyubiquitin 3 194 269 - -
Glsi01g0560 422 PRINTS Ubiquitin signature 94 115 IPR019956 -
Glsi01g0560 422 PRINTS Ubiquitin signature 52 72 IPR019956 -
Glsi01g0560 422 PRINTS Ubiquitin signature 73 93 IPR019956 -
Glsi01g0560 422 CDD Ubl_ubiquitin 118 193 - -
Glsi01g0560 422 FunFam Polyubiquitin 3 346 421 - -
Glsi01g0560 422 Pfam Ubiquitin family 272 343 IPR000626 GO:0005515
Glsi01g0560 422 Pfam Ubiquitin family 120 191 IPR000626 GO:0005515
Glsi01g0560 422 Pfam Ubiquitin family 348 419 IPR000626 GO:0005515
Glsi01g0560 422 Pfam Ubiquitin family 196 267 IPR000626 GO:0005515
Glsi01g0560 422 Pfam Ubiquitin family 44 115 IPR000626 GO:0005515
Glsi01g0560 422 ProSitePatterns Ubiquitin domain signature. 372 397 IPR019954 -
Glsi01g0560 422 SUPERFAMILY Ubiquitin-like 118 193 IPR029071 -
Glsi01g0560 422 CDD Ubl_ubiquitin 346 421 - -
Glsi01g0560 422 ProSiteProfiles Ubiquitin domain profile. 118 193 IPR000626 GO:0005515
Glsi01g0560 422 FunFam Polyubiquitin 3 118 193 - -
Glsi01g0560 422 ProSitePatterns Ubiquitin domain signature. 144 169 IPR019954 -
Glsi01g0560 422 ProSiteProfiles Ubiquitin domain profile. 42 117 IPR000626 GO:0005515
Glsi01g0560 422 CDD Ubl_ubiquitin 194 269 - -
Glsi01g0560 422 FunFam Polyubiquitin 3 42 117 - -
Glsi01g0560 422 SUPERFAMILY Ubiquitin-like 41 117 IPR029071 -
Glsi01g0560 422 ProSitePatterns Ubiquitin domain signature. 296 321 IPR019954 -
Glsi01g0560 422 SUPERFAMILY Ubiquitin-like 345 421 IPR029071 -
Glsi01g0560 422 CDD Ubl_ubiquitin 42 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0560 Glsi-ChrGlsi01 6907272 6909512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0560 346 421 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 2.66e-47 157