Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0552 ATGATGCTTCACAAGACTACTCAATTTGTGCTCCTCTGCATTCTTCCTTTCCTTTCTAACGTTGCATTGGCTGACCCACCTTATGAAATCTGTTCAACAAGCAGCAGCTACGCTAAAGGAAGTACCTTTCAGAACAATTTGAACAACCTCCTTCTTTCTCTACCTTCCAATGCTTCTGTCTCCAAATCTTCCAATGTCTCTTCTGGGAATGACCCAGATAGAGTTTTCAGCCTCTTCATGTGTCTCGACTATGTTTCCAATCAAACCTGCCAGGATTGCATAGCCACTGCAACTCAGGACATTGTGAAACTCTGCCCTGAAGCCGAAGAAGCAATTGTTTGGGAGGAGGTATGCCAACTGCGTTATTCCAATAGAAATTTCTTCGGCAAAGTGAATGCCACAGGAAACCTGGGAAAGTTTAATTTGCAGAATATTTCAGACCCAGAAGAGTTTGAGTCTGTGGTGAATGGATTATTATATAACCTTACTGAGAAGGCATCTTTTAATGTTTCTGCAAACTTGTATGCTACTGGAGAAGTTCCGTTTGACAAGAAAACAATATTTGCCTTAGTCCAGTGCACGAGAGATTTATCAACCACTGATTGCAGTAGATGTCTGAGAAGTGCCATAAGTGATATACATGGTTGTTGCTATTCTTCCATCGGTGCTAGAGTTCTAAGTCGTAGCTGCTACCTGAGATTTGAATTTTACCCATTTTATGATGGTGAACCTGATCCCACTAATTCTTCAACAAAAGGCAAAAGCAGTGCAAGTAAAGTATGGATGATTGCAGGAATTACAGCTGCAGCAGGCTTGGCGATAGCAATTTTCAGTTGCTGCATTTACTTTCTCGTGAAGAAAAGAACTCAGAAAAGTAAGAAAGGAATAGACGGTCTTCCAATCGATCTTCATAGCTTTGGGCAGCGAGGCAATAAAGTGTTTCAACACCAAAATTTTCGTGGAAAAAATGATAACATATCTGAGAATTTGCCTTATTTTGATCTTGAAACTCTCTATGTGGCTACCAAAAACTTCTCTGATTCAAACAAGCTTGGCCAAGGTGGCTTTGGCCCTGTTTACAAGGGCGTACTAAGTGATGGCCAGGAAGTAGCAATCAAGAGGCTTTCAACCGGCTCCGAACAAGGTTCAGAGGAATTCATAAATGAGGTTCTGTTGATAATGAAACTTCAACACAAAAACCTTGTAAGGCTTCTGGGATTTTGTTTAGATGGAGAAGAAAAGCTTCTTGTTTATGAATTTTTGCCCAATGGCAGCCTTGATGTTGTCCTTTTTGATCCAAGGCAACGTGCGCAGCTAAATTGGAGCAAAAGGGTTGATATAATAGGCGGAATAGCAAGGGGGATTCTTTATCTTCATGAAGATTCTCGACTAAAAATAATTCACAGAGACTTAAAAGCAAGTAATATATTGTTGGATTTTGATATGACCCCAAAAATTTCAGACTTTGGAATGGCGAGGATATTTGCAGGAACTGAAGGCGAAGCTAGCACCGCTACTATAGTTGGCACATATGGGTACATGGCTCCTGAGTATGCTATGGAGGGATTATATTCCATAAAATCAGATGTTTTTGGCTTTGGAGTTCTATTACTTGAGATTATTACAGGGAGACGCAACACAGGCTTCTTTCACTCTAAACGTGCTCCTAGCCTTCCAGCATCTGCATGGCATTTATGGAACGAGGGAAGTGCACTGGACTTGATGGATCCCCTAGTAGCTGATTCATGCCTTGAAGATCAGTTTCTAAAATACATGAATCCAAGAACACATGAGCAGGACCAAGACCAAACTTCTATGAATTTGTCCGTCAGCATAAAGGAAAATCCAACTATGTTTTTCTTCATCATTCCCATCTTATTCGTACACCATGTTTCTGGAGCAGATCCTCTATTCACTTGGTGTCCAAGTGAATCCCCAGATTACACCCTCAATTCTACATTTCATAATAACCTCAAGCTTCTTCTGGGGTCACTCTCCTCCAACATTTCAGTGACAGGTTTCTACAGCACATCCATTGGAGACCAAACAGACAAGGTCTATGGACAAGCACTGTGCAGAGGTGACATAAACTCCAACGTTTGTCAGAAATGTGTTGAGAAAGCAAGCGAAGATATACTGAACAAGTGCAGGAGCCAAGATGCTATGATATGGTATGAGCTTTGTCAAGTTCGGTACTCCTTTCAGATGTTCATTTCTAGGATGGTTTATACTGGGAAGTTTCCACAGCAGGATAACCAGGAGAAGAATGTGTCAGATCCTGTTCGATTCAGCGAGGTTTTGATGTATTTAATGAAAAATTTGTCAAATGAGGCTGCCTTTCATCTTGCTCAGAACATGTTTGCTTCTGGGGAAATCAAATTTTCTGGGAAAGTTACAATATATGGTCTTGTACAATGCACCAGGGATATCTCTGAAACATCCTGCTATAACTGTTTGAGTTCCGCACTGGGAGATCTTGGAGCTTGTTGCTCCTACCGCGAAGGAGGGATGGTTCTTAGTCGAACCTGTAATGTGAGGTTTGGACTGTCTCAGTTCTTTAACACTTCACAGTACCAGTTGATTTACCCAACTTCAAAAGGAGGGAAATGGAAGACCTGGATGCTTGTGTTGATTATCTGTGCATCAATGTTAATATTAGCAGTTCTCATTGGTTTGTGCACTGCTTATTTCCATCGAAAAAAAGGGAGAGACAGAGATGAAGAAAAAAGCGAAAAGATGCTATTGCAGCAGTTGGCAAGCCCCAAGAGTGTAACAATTACACAAGATGGTGAATTAGTTAGCACTGAGGAACTGTTATTCATAAATTTAACAACAATTAAGGCAGGTACTGATAACTTTTCCGACACAAACAAGCTGGGTCAAGGAGGTTTTGGTGCAGTGTACAAGGGTGTTCTACCAGATGGAAATGAAGTAGCAGTTAAAAGGTTGTCAAGAAAGTCTTGGCAAGGCATAGAGGAATTCAAAAATGAGGTCATACTAATTGCAAAACTTCAGCACAAGAATCTGGTGAAGCTGTTAGGCTGTAGCTTGGAGGGAGAAGAAAAGCTCCTCATATATGAATTCATGTCCAACAAAAGCCTTGACAAATTTATCTTTGATCCAAAAAAACGTTCACAGCTGGATTGGAAGACATGCTATGGCATTATCATTGGGATAGCCAGAGGACTACTGTACCTTCATGAGGAGTCAAGGCTTAGAATCATTCACAGAGACTTGAAGCCAAACAACGTGTTGCTTGATCGTGATATGGTTGCTAAGATATCAGATTTTGGTATGGCAAGGATTTTTTGTGAAAATCAGAATGCTGCCAATACAAAAAGAGTTGTTGGAACTTACGGATACATGGCTCCAGAGTATGCAATGGAGGGACTGTTCTCTATGAAATCAGATATTTTCAGTTTCGGTGTCATCTTGCTTGAGATCATTAGTGGAAAAAGAAACAGTGGCTTTTATGTTACTGAACTTGCCTCGACCCTGCTAGCATATGCATGGAGGCTATGGAATGAAGGAAGAGACTTGGAATTTGTGGATCCTATGCTGTTGGAATCATGTCTTGCCTCTGAAGTTTTAAGGTGCATGCATGTTGGGCTGTTATGTGTACAGGAAGATCCAGAAGATAGACCCACCATGTCAAATGTGATGGTTCTGCTAGGAAGTGAAACAATGGCTGTTCCCCAACCCAAACAACCAGCATTTTCTCTGGGTAGAGCGATTCCAGTCGATCCATCTTTAATATCAAGTTCCTCAGTGAATAATTTTATAATGTCTAGTGTTCTACCTCGATGA 3807 0.4098 MMLHKTTQFVLLCILPFLSNVALADPPYEICSTSSSYAKGSTFQNNLNNLLLSLPSNASVSKSSNVSSGNDPDRVFSLFMCLDYVSNQTCQDCIATATQDIVKLCPEAEEAIVWEEVCQLRYSNRNFFGKVNATGNLGKFNLQNISDPEEFESVVNGLLYNLTEKASFNVSANLYATGEVPFDKKTIFALVQCTRDLSTTDCSRCLRSAISDIHGCCYSSIGARVLSRSCYLRFEFYPFYDGEPDPTNSSTKGKSSASKVWMIAGITAAAGLAIAIFSCCIYFLVKKRTQKSKKGIDGLPIDLHSFGQRGNKVFQHQNFRGKNDNISENLPYFDLETLYVATKNFSDSNKLGQGGFGPVYKGVLSDGQEVAIKRLSTGSEQGSEEFINEVLLIMKLQHKNLVRLLGFCLDGEEKLLVYEFLPNGSLDVVLFDPRQRAQLNWSKRVDIIGGIARGILYLHEDSRLKIIHRDLKASNILLDFDMTPKISDFGMARIFAGTEGEASTATIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGRRNTGFFHSKRAPSLPASAWHLWNEGSALDLMDPLVADSCLEDQFLKYMNPRTHEQDQDQTSMNLSVSIKENPTMFFFIIPILFVHHVSGADPLFTWCPSESPDYTLNSTFHNNLKLLLGSLSSNISVTGFYSTSIGDQTDKVYGQALCRGDINSNVCQKCVEKASEDILNKCRSQDAMIWYELCQVRYSFQMFISRMVYTGKFPQQDNQEKNVSDPVRFSEVLMYLMKNLSNEAAFHLAQNMFASGEIKFSGKVTIYGLVQCTRDISETSCYNCLSSALGDLGACCSYREGGMVLSRTCNVRFGLSQFFNTSQYQLIYPTSKGGKWKTWMLVLIICASMLILAVLIGLCTAYFHRKKGRDRDEEKSEKMLLQQLASPKSVTITQDGELVSTEELLFINLTTIKAGTDNFSDTNKLGQGGFGAVYKGVLPDGNEVAVKRLSRKSWQGIEEFKNEVILIAKLQHKNLVKLLGCSLEGEEKLLIYEFMSNKSLDKFIFDPKKRSQLDWKTCYGIIIGIARGLLYLHEESRLRIIHRDLKPNNVLLDRDMVAKISDFGMARIFCENQNAANTKRVVGTYGYMAPEYAMEGLFSMKSDIFSFGVILLEIISGKRNSGFYVTELASTLLAYAWRLWNEGRDLEFVDPMLLESCLASEVLRCMHVGLLCVQEDPEDRPTMSNVMVLLGSETMAVPQPKQPAFSLGRAIPVDPSLISSSSVNNFIMSSVLPR 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0552 1268 ProSiteProfiles Gnk2-homologous domain profile. 25 127 IPR002902 -
Glsi01g0552 1268 FunFam Cysteine-rich receptor-like protein kinase 10 915 1028 - -
Glsi01g0552 1268 ProSiteProfiles Gnk2-homologous domain profile. 636 737 IPR002902 -
Glsi01g0552 1268 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 635 737 - -
Glsi01g0552 1268 ProSiteProfiles Gnk2-homologous domain profile. 745 852 IPR002902 -
Glsi01g0552 1268 ProSiteProfiles Protein kinase domain profile. 953 1239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0552 1268 ProSiteProfiles Protein kinase domain profile. 345 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0552 1268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Glsi01g0552 1268 ProSiteProfiles Gnk2-homologous domain profile. 133 239 IPR002902 -
Glsi01g0552 1268 FunFam Cysteine-rich receptor-like protein kinase 28 27 126 - -
Glsi01g0552 1268 Gene3D - 746 852 IPR038408 -
Glsi01g0552 1268 Gene3D - 26 127 IPR038408 -
Glsi01g0552 1268 Gene3D - 637 737 IPR038408 -
Glsi01g0552 1268 Gene3D - 136 239 IPR038408 -
Glsi01g0552 1268 FunFam Cysteine-rich receptor-like protein kinase 10 315 420 - -
Glsi01g0552 1268 CDD STKc_IRAK 959 1220 - -
Glsi01g0552 1268 Pfam Protein tyrosine and serine/threonine kinase 348 544 IPR001245 GO:0004672|GO:0006468
Glsi01g0552 1268 Pfam Protein tyrosine and serine/threonine kinase 956 1222 IPR001245 GO:0004672|GO:0006468
Glsi01g0552 1268 Gene3D Phosphorylase Kinase; domain 1 916 1028 - -
Glsi01g0552 1268 Gene3D Phosphorylase Kinase; domain 1 308 420 - -
Glsi01g0552 1268 Pfam Salt stress response/antifungal 143 236 IPR002902 -
Glsi01g0552 1268 Pfam Salt stress response/antifungal 755 848 IPR002902 -
Glsi01g0552 1268 Pfam Salt stress response/antifungal 31 124 IPR002902 -
Glsi01g0552 1268 Pfam Salt stress response/antifungal 641 734 IPR002902 -
Glsi01g0552 1268 SUPERFAMILY Protein kinase-like (PK-like) 327 592 IPR011009 -
Glsi01g0552 1268 Gene3D Transferase(Phosphotransferase) domain 1 1029 1233 - -
Glsi01g0552 1268 Gene3D Transferase(Phosphotransferase) domain 1 421 614 - -
Glsi01g0552 1268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1074 1086 IPR008271 GO:0004672|GO:0006468
Glsi01g0552 1268 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 638 1242 - -
Glsi01g0552 1268 SUPERFAMILY Protein kinase-like (PK-like) 937 1223 IPR011009 -
Glsi01g0552 1268 FunFam Cysteine-rich receptor-like protein kinase 10 137 239 - -
Glsi01g0552 1268 ProSitePatterns Protein kinases ATP-binding region signature. 959 981 IPR017441 GO:0005524
Glsi01g0552 1268 SMART serkin_6 345 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0552 1268 SMART serkin_6 953 1224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0552 1268 FunFam Uncharacterized protein 1029 1230 - -
Glsi01g0552 1268 FunFam Liguleless narrow1 421 612 - -
Glsi01g0552 1268 FunFam Cysteine-rich receptor-like protein kinase 10 748 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0552 Glsi-ChrGlsi01 6689217 6697188 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0552 29 590 Receptor kinase-like Gene Family AT4G23230 41.397 6.11e-135 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi01g0552 PK_Tyr_Ser-Thr 4.1e-47 CL0016