Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0550 ATGGCTAGCTTCAAATACCCTTGTCTATTTCTTTCTCTGTTGGGGTTTCTTAGCTTTACAATTGAATTTGAAATATTTCCCGGTTACAGATTCATTTACTGCTCAAAGGGTACCACATACAGATTTAACAGCACATTTCAAGCTAATCTTCATGTCCTCCTCTCCTCTCTCACCTCCAATGCCACCCAAGACAATGGCTTCTATAGCGCTGTTATGGGTTGGGGAACCACAGATATCGTCAACGGAGAATTTCTTTGTCGCGGCGATGTCTCTCCCTCCACTTGTCAAGACTGTGTCACCAAGGCAGCCAAAGAGATCATACGCCTCTGCCCCAACCAAACCGAGTCTATAATCTATTACGATCTCTGCATGTTGCGTTACACCAACCAATCCTTCAAGTTCGATAGCATGCTTGCTGGATTGTACATGTACAACATGCAACATATCAATAGCTCCGACCAGCCCCTTATCAAGAAATTATTGGGTGGCTTTTTGAAAGATTTGGCTGCAAAGGCTGCGAATACGCCGTTGGAGAAGAAGTATGCTATCGGCGAAGAGCAATTTACGAGCACGCAGAAGCTGTACGGCCTAGAGCAGTGCACGCCAGATTTGAAGACGGAGGAATGTAAGGAGTGCTTCGAAACGGCCATTGGGTACATTCCGGCGTGTTGTGAGGGACGACAAGGCGCTAGAGTTATGCTTCCGGGTTGTAACATTAGATACGAGCTTTATCCATTTTATAATGTAACCGCGACATCAGCTGCTTCTGCTCCACAAATTCCGCCAGCTTCTTCTTCAGGAAAAAGAGGTACTGGATCACGAACCATTGTCGTGATTGCAGTTCCCAGTGCTATTTTAGTGACTCTTTTTGGTTTGGGCGGCTATTTCCTACGGAGAAAAGCGAGGAAGAGTCACGGGGCAATTCTAAAAGAAAACTTTGGGGAAGAAAGTTCCCACTTGAAATCATTGCGATTTAATTTGGCTACAATTGAAGCAGCGACAAATAAGTTTTCAAACGAGCACAGAATAGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTACTGATGGAAGAGAAATTGCTGTAAAGAGACTCTCAAAAAGTTCTGGACAAGGAGCGTTAGAATTCAAGAATGAAGTTATGTTGATCGCTAAACTTCAGCACCGAAATTTAGTGGCCTTGTTAGGATTTTGCTTGGAAGAACAAGAGAAAATACTTATTTATGAATATGTGCCCAACAAGAGCCTTGATCACTTTTTATTTGATTTTGAGAAGAGAAGACTATTAAGTTGGTCGGAACGTTTCAAAATCTTAGTAGGAATCACTCGAGGACTTCTTTATTTACATGAGCACTCTCGGCTCAAAGTTATTCATCGTGATCTCAAACCTAGTAATATTTTATTAGATAACAATATGAATCCCAAAATATCAGATTTTGGCTTGGCAAGAATGGTTACAATAGATCAAGACCAAGGAAGTACTAATAGAATTGTTGGAACATAG 1509 0.4195 MASFKYPCLFLSLLGFLSFTIEFEIFPGYRFIYCSKGTTYRFNSTFQANLHVLLSSLTSNATQDNGFYSAVMGWGTTDIVNGEFLCRGDVSPSTCQDCVTKAAKEIIRLCPNQTESIIYYDLCMLRYTNQSFKFDSMLAGLYMYNMQHINSSDQPLIKKLLGGFLKDLAAKAANTPLEKKYAIGEEQFTSTQKLYGLEQCTPDLKTEECKECFETAIGYIPACCEGRQGARVMLPGCNIRYELYPFYNVTATSAASAPQIPPASSSGKRGTGSRTIVVIAVPSAILVTLFGLGGYFLRRKARKSHGAILKENFGEESSHLKSLRFNLATIEAATNKFSNEHRIGKGGFGEVYKGILTDGREIAVKRLSKSSGQGALEFKNEVMLIAKLQHRNLVALLGFCLEEQEKILIYEYVPNKSLDHFLFDFEKRRLLSWSERFKILVGITRGLLYLHEHSRLKVIHRDLKPSNILLDNNMNPKISDFGLARMVTIDQDQGSTNRIVGT 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0550 502 FunFam Cysteine-rich receptor-like protein kinase 10 140 246 - -
Glsi01g0550 502 ProSiteProfiles Gnk2-homologous domain profile. 28 132 IPR002902 -
Glsi01g0550 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Glsi01g0550 502 Pfam Protein kinase domain 338 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0550 502 ProSiteProfiles Protein kinase domain profile. 337 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0550 502 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 127 502 - -
Glsi01g0550 502 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Glsi01g0550 502 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 413 502 - -
Glsi01g0550 502 Gene3D Phosphorylase Kinase; domain 1 300 412 - -
Glsi01g0550 502 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 132 - -
Glsi01g0550 502 SUPERFAMILY Protein kinase-like (PK-like) 318 502 IPR011009 -
Glsi01g0550 502 Gene3D Transferase(Phosphotransferase) domain 1 413 502 - -
Glsi01g0550 502 ProSiteProfiles Gnk2-homologous domain profile. 139 246 IPR002902 -
Glsi01g0550 502 Pfam Salt stress response/antifungal 161 244 IPR002902 -
Glsi01g0550 502 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Glsi01g0550 502 SMART serkin_6 337 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0550 502 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 298 412 - -
Glsi01g0550 502 Gene3D - 140 246 IPR038408 -
Glsi01g0550 502 Gene3D - 29 132 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0550 Glsi-ChrGlsi01 6618735 6621556 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0550 27 502 Receptor kinase-like Gene Family AT4G05200 47.444 1.01e-151 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi01g0550 Pkinase 1.6e-35 CL0016