Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0541 ATGGCGGTTACCTTTAAATACTGTACAATCTGCTACAATCTTGTTTCCCTCGTTGCGTTTCTTAGCTTCGCAACCCAAGCAACTCCCACCTATCTTGGTAATTCCTGCTCAAACACTACCACCTACGCTCCCAATAGCAGATTCCATGGCAATCTTAATGCCCTCCTTTATTCTCTCACCACGAACTCCTCCCAAGAAGACGGCTACTACATGACCATCATGGGCTTCGGCACTACCGATGCCGTCAACGGACTCTTCCTCTGCCGCGGCGACCTCAACACCAGCATATGTCAAGGGTGCGTCGCAGCCGCAGCCAAAGAGATAATCCGGCGCTGCCCTAATCAAACGGAGTCCATCATCTGGTACGATGAGTGCATGTTGCGCTACACAAACAGGTACTTCAAGTTCTTCAGCACCGTCCCTGGGAAAAACTTGGAGGATGGAAAGAATATCTCTGGCTCCCAATTGAACGGGTTCAATCAATCTTTGTTTAGCTTGTTGAATGATTTAGCATCAAAAGCTGCGAATTCTCAGTCCGCGAAGAAGTTCGCCACCGGCGAAGTGAAGTTCAGCAGCAATCAGACGATGTATGGGTTGGAGCAGTGCACAGGTGACATAACGGCGGATCAGTGTCAGACGTGCTTGAAAAATGCCATCGGAACTCTTCCGACGTGCTGTGAGGGGAAAGAAGGCGCAACAGCTTTGCTTGCGTCATGTAATATCAGATATGAACTGTATCGGTTTTACAATACGTCGGGTTCATCACCGGCTCCATCTTCAGGAAGAAAGAAATTTCGACCACGAACAGTTGCCTTGATTGTTGTCCTTGTTGTCGTTTCAATAATTCTCCTCGGTTTTGGCGGCTATTTCCTATTGAGAAGATCAAGGAAGAATCACAGGACTATTTTAAGAGAAAATTTTGGTGATGAAATTAACACTTTGGAGTCATTGCAATTCAGTTTGGCTACGATCCAAGCTGCCACAAACAAGTTTTCACAAGAGAACAAAATTGGCAGAGGTGGATTTGGAGAAGTTTACAAGGGAGCTCTTTCCGATGGACGAGAAATTGCTGTAAAGAAACTTTCAAGAAGTTCTGGACAAGGTGCAAAAGAATTTAAGAATGAAATAGTACTAATTGCCAAGCTACAACACAGGAATTTGGTGGCCTTACTAGGATTTTGCTTGGATGAGCAAGAAAAAATGCTTATTTATGAATATGTGCCCAACAAGAGCCTAGATTACTTTCTATTCGATATCAAAAAACCACGATTGTTGAATTGGTTTGAGCGTTACAAAATCATTGGAGGAATTGCACGAGGAGTTCATTATCTACATGAGCATTCAAGACTCAAAATTATACACCGTGATCTCAAACCTAGCAATGTGTTATTAGATGACAAAATGAATCCAAAAATCTCAGACTTTGGCATGGCAAGAATAGTTGCTATAGATCAAGATCAAGAAAATACTAATAGAATAGTTGGAACATATGGTTACATGTCTCCAGAATATGCAATGCATGGACAATTTTCTGAGAAGTCAGATGTATTTAGTTTTGGAGTCATAGTTATGGAGATTATTAGTGCAAAAAGGAATGCCCGTTCTCTTGAAACACAAAACCTAGATGATCTCTTAAGTTCTGCTTGGAAACAATGGAGGAATCAGACACCACTAGAAATACTGGATCCTGAACTAAAAGATTCATTTTCTCAGAGTGAAGTGATCAAGTGCATCCAAATTGGTTTATTATGCGTTCAAGAAAACCCAGATAGTAGACCCACGATGGCAAGAGTTGTTTCATATCTCAGTAGCCTTTTAGTTGAATTGCCAATTCCTCGAGAACCAGCCTTTTTCATGGATACTGATATGAAGCTGAACTTAACCTCATGGGAGTCCAGTTCAGGTCAATCTACCCATAATTCTAGGACATCCTCGAACAATGACATGTCTAAGAGTAACTATTTTCCTCGATAG 1974 0.4205 MAVTFKYCTICYNLVSLVAFLSFATQATPTYLGNSCSNTTTYAPNSRFHGNLNALLYSLTTNSSQEDGYYMTIMGFGTTDAVNGLFLCRGDLNTSICQGCVAAAAKEIIRRCPNQTESIIWYDECMLRYTNRYFKFFSTVPGKNLEDGKNISGSQLNGFNQSLFSLLNDLASKAANSQSAKKFATGEVKFSSNQTMYGLEQCTGDITADQCQTCLKNAIGTLPTCCEGKEGATALLASCNIRYELYRFYNTSGSSPAPSSGRKKFRPRTVALIVVLVVVSIILLGFGGYFLLRRSRKNHRTILRENFGDEINTLESLQFSLATIQAATNKFSQENKIGRGGFGEVYKGALSDGREIAVKKLSRSSGQGAKEFKNEIVLIAKLQHRNLVALLGFCLDEQEKMLIYEYVPNKSLDYFLFDIKKPRLLNWFERYKIIGGIARGVHYLHEHSRLKIIHRDLKPSNVLLDDKMNPKISDFGMARIVAIDQDQENTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIVMEIISAKRNARSLETQNLDDLLSSAWKQWRNQTPLEILDPELKDSFSQSEVIKCIQIGLLCVQENPDSRPTMARVVSYLSSLLVELPIPREPAFFMDTDMKLNLTSWESSSGQSTHNSRTSSNNDMSKSNYFPR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0541 657 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 134 - -
Glsi01g0541 657 Gene3D Transferase(Phosphotransferase) domain 1 407 609 - -
Glsi01g0541 657 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 652 - -
Glsi01g0541 657 SMART serkin_6 331 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0541 657 FunFam cysteine-rich receptor-like protein kinase 10 407 609 - -
Glsi01g0541 657 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 292 406 - -
Glsi01g0541 657 Gene3D - 29 134 IPR038408 -
Glsi01g0541 657 Gene3D - 146 248 IPR038408 -
Glsi01g0541 657 Gene3D Phosphorylase Kinase; domain 1 294 406 - -
Glsi01g0541 657 CDD STKc_IRAK 337 605 - -
Glsi01g0541 657 SUPERFAMILY Protein kinase-like (PK-like) 316 642 IPR011009 -
Glsi01g0541 657 FunFam Cysteine-rich receptor-like protein kinase 10 143 248 - -
Glsi01g0541 657 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Glsi01g0541 657 Pfam Salt stress response/antifungal 157 246 IPR002902 -
Glsi01g0541 657 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Glsi01g0541 657 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Glsi01g0541 657 ProSiteProfiles Gnk2-homologous domain profile. 139 248 IPR002902 -
Glsi01g0541 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Glsi01g0541 657 Pfam Protein kinase domain 332 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0541 657 ProSiteProfiles Protein kinase domain profile. 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0541 657 MobiDBLite consensus disorder prediction 630 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0541 Glsi-ChrGlsi01 6293804 6297956 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0541 13 657 Receptor kinase-like Gene Family AT4G05200 47.156 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi01g0541 Pkinase 1.2e-49 CL0016