Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0538 ATGGCAATGGCTATCATTTCTTTGGCACTGCTTTCATTCCTTTCTTATCTTACCATTCTCACCGCCCAGCCTGTCTTCCGATATAGCTACTGTTTCAATGACAAAGGCAACTACACAGCTACTAGTGCATACCACACCAACCTCAATATCCTTCTTTCAAATCTCACTTCCAACACACAAATTGACTACGGCTTCTACAATATCTCTCATGGCCAAAACCCTGACAGAGTTAGCGCTATTGGACTCTGTCGAGGAGATGTTAAGCCAGATGCTTGCCGTAGTTGCCTCAACAATTCTTCAATACTTCTCCCTAAGTTGTGCCCAAATCAGAAGGAGGCAATGGGGGGCTATGATGAATGCATGCTACGATACTCAAACCGTTCAATTTTAGGGGTAATGGAAGATGATTTTTCGCTCTATTTGTGGAATCCAAATAATGCAACAGACTTGGATAAGTTCAATCAAGTGGTTGATGAGTTACTGGAAAGACTAAGAAGCAAAGCTGCAGCTGGTGACTCCCTTCGTAAGTTTGCTGCAGCAAATGAAACGGGTCCAAGCTTTCAAACTATATTCGGTCTTGTTCAGTGCATGCCTGATTTGTCTGAGCAAGATTGCTCCGACTGCTTGGTGAAGGCTTTCTCAGAAATCCCACAATGTTGTGGGACAAAGAGAGGTGGTAGGGTTATCAAACCCAGCTGCAATATTAGATATGAGAACTACCGCTTCTATGAACCTGTAGCCGATGATTCACCACCACAAGCATCTCCTCCTCTTGCTCCATCTCCCCAATCCCCAGAAGGAAATAGCAAAAAATCAAGGACCGTTATTGTCATAGTTGTGCCAATTGTTGCCTTTGTCATACTACTCATCTTGATCTGCATCTATTTTGGAGTGAGGAAATCAAAAAAAACTATTAAAATTGAAGCAAAAACTGACAATGAAATTGAACCAATTGAGTCATTCCAATTCGACTTTGAAACAGTCAGACTTGCTACAGATAACTTCTCCGATGCAAATAAGCTTGGACAAGGTGGGTTTGGACCAGTTTACAAGGGTAAACTCAACAATGGACAAGAAATTGCTGTTAAAAGGTTATCTAAGGATTCTGGGCAAGGTGATTCAGAATTTAAGAATGAGGTGGTGTTGGTGGCCAAGCTGCAGCATCGCAATTTAGTCAGACTACTTGGTTTCTGTTTAGAAAGAAGAGAAAGGCTACTTGTCTATGAGTTTCTTCCCAATAAAAGTCTTGATTACTTAATATTTGATCCAAACCAGCGTGCACAATTGAATTGGGAAATGCGCTACAAAATCATAGGAGGCACCGCTCGTGGCCTTCTGTATCTTCACGAGGATTCTCGATTACGTATCATTCATCGTGATCTCAAAGCAAGCAACATTCTTTTAGATGAAGAATTGAATCCTAAAATATCAGATTTTGGCATGGCCAAACTATTTGTTATGGATCAAACTCAAAGCAATACTAGTAGAATTGTTGGAACCTATGGATACATGGCACCAGAGTATGCAATGCATGGACAATTTTCAGTGAAATCCGATGTTTTCAGTTTTGGTGTGCTAGTTTTAGAGATTGTAAGTGGTCATAAGAACAGTGGCATCTTACATGGGCAAAATGTACAGGATCTACTAACCTTTGTTTGGAAAAACTGGAGGGAAGGGACAGCCTCAAATATAGTAGATCCAGTATTACACAATGGTTCAAGAAATGAAATGATGAGATGCATACACATTGGGTTACTCTGCATTCAAGAAAATGTGGCTAACAGGCCAACCATGGCTTCAGTTGTACTTATGCTTAGCAGCAATTCTTTCTCTCTCCCATTGCCCTCACAACCTCCATTTTTAATGGATAGCAGAAGTATATCAGACACGCATTCGAGGGATTTTAGTTCAAGGGCAACAAGATCCAGTGAAAGGGAAGGTAACTTTGTTCAAGCATCAAGTGAACGAGAAAACAACTCTGTCCAAGCCTCAGAAAATGAGGCCTCAATTACTGAGCTATACCCTCGGTAG 2031 0.4111 MAMAIISLALLSFLSYLTILTAQPVFRYSYCFNDKGNYTATSAYHTNLNILLSNLTSNTQIDYGFYNISHGQNPDRVSAIGLCRGDVKPDACRSCLNNSSILLPKLCPNQKEAMGGYDECMLRYSNRSILGVMEDDFSLYLWNPNNATDLDKFNQVVDELLERLRSKAAAGDSLRKFAAANETGPSFQTIFGLVQCMPDLSEQDCSDCLVKAFSEIPQCCGTKRGGRVIKPSCNIRYENYRFYEPVADDSPPQASPPLAPSPQSPEGNSKKSRTVIVIVVPIVAFVILLILICIYFGVRKSKKTIKIEAKTDNEIEPIESFQFDFETVRLATDNFSDANKLGQGGFGPVYKGKLNNGQEIAVKRLSKDSGQGDSEFKNEVVLVAKLQHRNLVRLLGFCLERRERLLVYEFLPNKSLDYLIFDPNQRAQLNWEMRYKIIGGTARGLLYLHEDSRLRIIHRDLKASNILLDEELNPKISDFGMAKLFVMDQTQSNTSRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLVLEIVSGHKNSGILHGQNVQDLLTFVWKNWREGTASNIVDPVLHNGSRNEMMRCIHIGLLCIQENVANRPTMASVVLMLSSNSFSLPLPSQPPFLMDSRSISDTHSRDFSSRATRSSEREGNFVQASSERENNSVQASENEASITELYPR 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0538 676 FunFam Cysteine-rich receptor-like protein kinase 10 298 410 - -
Glsi01g0538 676 Gene3D - 25 128 IPR038408 -
Glsi01g0538 676 Gene3D - 134 242 IPR038408 -
Glsi01g0538 676 FunFam cysteine-rich receptor-like protein kinase 10 411 612 - -
Glsi01g0538 676 Gene3D Phosphorylase Kinase; domain 1 309 410 - -
Glsi01g0538 676 Pfam Protein kinase domain 336 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0538 676 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Glsi01g0538 676 SUPERFAMILY Protein kinase-like (PK-like) 320 638 IPR011009 -
Glsi01g0538 676 Gene3D Transferase(Phosphotransferase) domain 1 411 611 - -
Glsi01g0538 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Glsi01g0538 676 ProSiteProfiles Protein kinase domain profile. 335 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0538 676 SMART serkin_6 335 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0538 676 FunFam Cysteine-rich receptor-like protein kinase 10 137 242 - -
Glsi01g0538 676 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Glsi01g0538 676 Pfam Salt stress response/antifungal 146 240 IPR002902 -
Glsi01g0538 676 MobiDBLite consensus disorder prediction 627 641 - -
Glsi01g0538 676 MobiDBLite consensus disorder prediction 642 669 - -
Glsi01g0538 676 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 129 - -
Glsi01g0538 676 MobiDBLite consensus disorder prediction 623 676 - -
Glsi01g0538 676 CDD STKc_IRAK 341 605 - -
Glsi01g0538 676 MobiDBLite consensus disorder prediction 248 269 - -
Glsi01g0538 676 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 672 - -
Glsi01g0538 676 ProSiteProfiles Gnk2-homologous domain profile. 135 242 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0538 Glsi-ChrGlsi01 6275745 6279274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0538 34 676 Receptor kinase-like Gene Family AT4G21410 50.901 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi01g0538 Pkinase 1.1e-45 CL0016