Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0526 ATGGTGAAGAGAAAGTCTAGCTCAGGTCGCCAAAAAATCCCTATTGAGAAAATACCAAAGAAAAGCCATCTGCAAGTTACCTTCTCCAAGCGTCGTTCAGGACTTTTCAAGAAGGCTAGTGAGCTTTGCACACTATGTGGTGTGGAGATAGCAATTATAGTATTCTCTCCAGCTGATAAGGCCTTCTCTTTCGGCCACCCGGAAGTTGAATCCATTATCAATCGCTATCTTACCCGAAACCTTCCACAGGAAGCAGGTGCTCACCAACTTGTTGAGGCTCATCGAAATACCAATGTTCGCGATCTCAATGTGCAGCTGACACAACTTCTCAATCAATTGGAGATTGAGAGAAAGCGAGGAGAAGAGCTAGACCAAGTGAGGAAAGCTAGGCAGAGGCAATTCTGGTGGGAGAGCCCAGTTGATGAACTAGGGCTGCTTGAGTTACAGCAATTGATGGTTTCAATGGAAGAACTGAAGAAGAATGTAGGGAAAATGGGTGGCAAAATGTTGATGGAGCATAGCAGCATGTCTTCACCAATTATGGGAGCACATGAACTTGGACGCTATGATGCCTTTGAGAGCAAACCTACAGCTATGAATATTAATGTTGTTTATAATCTTCCTCATGCCTATAATCACAATTGTCGGCCTGGTTATCTGTGA 663 0.4404 MVKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIINRYLTRNLPQEAGAHQLVEAHRNTNVRDLNVQLTQLLNQLEIERKRGEELDQVRKARQRQFWWESPVDELGLLELQQLMVSMEELKKNVGKMGGKMLMEHSSMSSPIMGAHELGRYDAFESKPTAMNINVVYNLPHAYNHNCRPGYL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0526 220 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Glsi01g0526 220 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Glsi01g0526 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Glsi01g0526 220 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Glsi01g0526 220 Coils Coil 96 123 - -
Glsi01g0526 220 PANTHER MADS BOX PROTEIN 10 163 - -
Glsi01g0526 220 Gene3D - 89 175 - -
Glsi01g0526 220 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Glsi01g0526 220 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Glsi01g0526 220 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Glsi01g0526 220 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Glsi01g0526 220 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Glsi01g0526 220 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0526 Glsi-ChrGlsi01 5702466 5703128 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0526 7 162 Type I MADS-box Gene Family AT2G24840 54.088 1.32e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi01g0526 SRF-TF 2.7e-23 No_clan