Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0524 ATGTCCAGCTCAGTTTCAAGGAAGAGCAAGGGCCGCCAAAGGGTGGAAATGAAAAAGATGACCAATGAGAACAACCTCCAAGCCACCTTTTCGAAGCGACGAACTGGTCTCTTCAAGAAGGCCAGTGAGCAGTGCACACTTACAGGCGCAGAGGTCGGTCTCATCGTCTTCTCCCCTTCTGACAAAGCCTACTCTTTTGGCCAGCCTAATATTGATACTGTGGTTGGGCGCTACCTTACTGGAGCCCCACCTACACAGATCCCCCCTACCAAGCAAATTCTCGAGGCCTTTCGCAATGTTAGAGTTCGTGAGCTCAATGCGGAACTCTCTGAGGTCATGAACCATCTTGAAATTGAGAAGAAGCGTTCAGAGGAACTGAACAACCAGAAAAAGGCAATGCAAGCTATGTACTGGTGGGCTGCCTCACCTGATGATTTTACAAGGCCAGAGTTGGAGAAGATGAAGGAGGTCTTGGAGGACCTGAAGAAGAGCCTCACTCGCGAAACTGATCGGGGCCTCCTCAATATTCAGAGTGCTTCCAACCCTGCTCAGTTCCATGCAGGCAGCTCCTCCTCGGACCCGATGCCATTAACACAAAGGGCAGCACCAAGCCAAGCATTTCCGCCGCTGCAGATGCTGCGACCGCCACCAATGATCCAAAGCCCTGCAGTGCAGCAGAATCCGATGTTTGACGGAAACATGATGCCATTGCCACTCCATGGGCTTAACAACATGGTAGGTTATGGAACAAGATCAGGCTTTTACTGA 768 0.5104 MSSSVSRKSKGRQRVEMKKMTNENNLQATFSKRRTGLFKKASEQCTLTGAEVGLIVFSPSDKAYSFGQPNIDTVVGRYLTGAPPTQIPPTKQILEAFRNVRVRELNAELSEVMNHLEIEKKRSEELNNQKKAMQAMYWWAASPDDFTRPELEKMKEVLEDLKKSLTRETDRGLLNIQSASNPAQFHAGSSSSDPMPLTQRAAPSQAFPPLQMLRPPPMIQSPAVQQNPMFDGNMMPLPLHGLNNMVGYGTRSGFY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0524 255 MobiDBLite consensus disorder prediction 178 199 - -
Glsi01g0524 255 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Glsi01g0524 255 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Glsi01g0524 255 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Glsi01g0524 255 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Glsi01g0524 255 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Glsi01g0524 255 Gene3D - 22 87 IPR036879 GO:0003677|GO:0046983
Glsi01g0524 255 SUPERFAMILY SRF-like 11 87 IPR036879 GO:0003677|GO:0046983
Glsi01g0524 255 FunFam Agamous-like MADS-box protein AGL62 22 87 - -
Glsi01g0524 255 Coils Coil 148 171 - -
Glsi01g0524 255 Coils Coil 102 136 - -
Glsi01g0524 255 Gene3D - 90 171 - -
Glsi01g0524 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Glsi01g0524 255 PANTHER MADS BOX PROTEIN 12 168 - -
Glsi01g0524 255 MobiDBLite consensus disorder prediction 1 28 - -
Glsi01g0524 255 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0524 Glsi-ChrGlsi01 5655318 5656085 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0524 7 193 Type I MADS-box Gene Family AT5G60440 45.833 3.71e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi01g0524 SRF-TF 1.4e-20 No_clan