Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0521 ATGTCGAACTCCTCGATTTCCAGGAAGGGCAAGGGTCGCCAAAAGGTGGAAATGAAAAAGATGACCAACGAGAACAACCTCCAAGTCACCTTCTCGAAGCGACGAACTGGTGTCTTCAAGAAGGCCAGTGAGCTGTGCACCCTTACTGGTGCAGAAGTTGCTCTCGTTGTCTTCTCGCCTGGTGACAAGGCCTACTCTTTTGGCCACCCAAATATTGAGGCTGTGGTTAAGCGCTACCTTACTGGATCCCCACCATCCCAGAAGATCTATACTTCCAACCAATTCCTTGAGGCTCACCGCAATGCCAATATTTGTGACCTCAATGCGGAGCTCACCGAGGTCATGAACCAGCTTGAAGCTGAGAAGAAGCATGGAGAGGAATTGGACAAGCAGAGAAAGGCGATGCAGGCTAACTACTGGTGGGCTGCCCCACCTGATGAGCTTACAGGGCCAGAGCTACAGAAGATGAAGGAGTATCTAGAGGGCCTGCAGAAGAACCTCACTCGCGAAACTGATCGGCGCCTCCTTATCCAGAGTGCTTGCAACAACCTAACCCAGTTCCATGCAGGCAGCTGCTCCTCCTCCGACCAGGTGCTATCCCCACTGCAGGCAAAACCAGGTCAGGTGTTTCCGCCGCTGCCGCGAATGATTCAGAAAGCTGGGGTGCAAAATCCAATGATGTTTGACGGAAACATGGGACCGTTGCCACCCCAAGGGTTCAACAATGTGGGTGGATATGGACTTGCAGGACCAAGGTTTGAAGATGACGATGGGTCATGTTTGTTATAG 789 0.5196 MSNSSISRKGKGRQKVEMKKMTNENNLQVTFSKRRTGVFKKASELCTLTGAEVALVVFSPGDKAYSFGHPNIEAVVKRYLTGSPPSQKIYTSNQFLEAHRNANICDLNAELTEVMNQLEAEKKHGEELDKQRKAMQANYWWAAPPDELTGPELQKMKEYLEGLQKNLTRETDRRLLIQSACNNLTQFHAGSCSSSDQVLSPLQAKPGQVFPPLPRMIQKAGVQNPMMFDGNMGPLPPQGFNNVGGYGLAGPRFEDDDGSCLL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0521 262 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Glsi01g0521 262 Coils Coil 153 173 - -
Glsi01g0521 262 Gene3D - 94 185 - -
Glsi01g0521 262 Gene3D - 23 93 IPR036879 GO:0003677|GO:0046983
Glsi01g0521 262 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Glsi01g0521 262 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Glsi01g0521 262 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Glsi01g0521 262 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
Glsi01g0521 262 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Glsi01g0521 262 PANTHER MADS BOX PROTEIN 13 170 - -
Glsi01g0521 262 CDD MADS_MEF2_like 12 83 IPR033896 GO:0000977|GO:0045944
Glsi01g0521 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Glsi01g0521 262 MobiDBLite consensus disorder prediction 1 23 - -
Glsi01g0521 262 Coils Coil 101 128 - -
Glsi01g0521 262 SUPERFAMILY SRF-like 12 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0521 Glsi-ChrGlsi01 5636297 5637190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0521 8 195 Type I MADS-box Gene Family AT5G60440 50.265 9.22e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi01g0521 SRF-TF 2e-22 No_clan