Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0509 ATGGCACTCGAATTATTGTTCTTTGGTTTCTTTCTTCTTGCCACTTCCAACGATGCCTTGTCTCAAAGGGTAGAGAGCCTACCGGGCTTTCCTGGCAAACTTCCTCTCAAACTCGAAACTGGATATGTGGGTGTGGGCAACTCGGAGACCGTGCAGCTATTTTACTATTTCGTTGAATCTGAGAACAACCCAGACGATGATCCGTTGCTTCTTTGGCTCACCGGAGGCCCGGGTTGTTCTGGCTTTTCTGGCCTCGTCTATGAAGTAGGTCCATTGTTATTTGACTATGCAAATTCAACTGGGGACAAAGTGCCAAAGCTGAAGTTGAATCCATACTCATGGACTAAGGTAGCGAGCATGATATTCATAGACGCACCTGTGGGTACCGGATTCTCATATGCAACAAATGCAGAAGCATACGAAATCTGTGATACTATATCAGCGGCACAAACTTATGAATTTCTACAAAAGTGGTTATTGTCTCATCCCCAGTTCCTAAAAAATCCTCTCTATATAACTGGTGATTCTTATTCAGGAATAGTCCTCCCTATGATTGTTCAGAAGATATCTGAAGGTATCGAGGCAGGACACAAGCCACTAATGAACCTCAAGGGATATACGCTTGGAAACCCAGTGACAGATGCATCTGTTGACACAAGTTGGCAAGTTCCATTTGCTCATAGAACTGGGCTTATATCAGATTCACTCTATGAGGACACGAAAAGGAGTTGCAAAGGTGATTATGTAAATGTAGATACAAGCAATGGCGAATGCTTAAAGAACCTTGAAGTTGTGGATGAGTGCACGAAAATGCTTCAAGTAGGGCAAATATTAGAGCCTAATTGTGCTTTTGAAGCCCCAAAACCAAAGGGGTGGCCCCTGCCAAATCTATCAGAATGGGATCCCAGTTTTGTTACAGAGAATTACTTGGAGCTTCTTTCTGAGCTTCAAGCACCCAACAAAAGATGGTGTAGGATCTACCATTATGTGTTCTCTTACATCTGGGCCAACGATGGAGATGTCCAAACTGCGCTTCACGTTCGAAAGGGAACAATCGAGCATTGGGCTAGATGCAATCTTAGCTTATCTTACACTCAGAATGTCGTATGTACTGTACCATATCACAAGAGCCTAATCAAGAATGGCTATCAAGTTTTGATATACAGCGGAGATCATGACATGAAAATTCCATATCTTGGTACGATAGCATGGGTAAAATCTTTGAATTTGAGTATTCACCGCAAATGGGAACCATGGTACGTAGATGAACAAGTTGGAGGGTACACATTCGGGTACACACACAAGAATTACAGCTTGGTATATGCCACTGTGAAGGGAGCAGGTCATACAGCACCAGAGTACAAACCCAAGGAATGTCTTGCTATGATTTCTAGGTGGCTTGCTCGTTCCCCTCTCTAA 1419 0.4334 MALELLFFGFFLLATSNDALSQRVESLPGFPGKLPLKLETGYVGVGNSETVQLFYYFVESENNPDDDPLLLWLTGGPGCSGFSGLVYEVGPLLFDYANSTGDKVPKLKLNPYSWTKVASMIFIDAPVGTGFSYATNAEAYEICDTISAAQTYEFLQKWLLSHPQFLKNPLYITGDSYSGIVLPMIVQKISEGIEAGHKPLMNLKGYTLGNPVTDASVDTSWQVPFAHRTGLISDSLYEDTKRSCKGDYVNVDTSNGECLKNLEVVDECTKMLQVGQILEPNCAFEAPKPKGWPLPNLSEWDPSFVTENYLELLSELQAPNKRWCRIYHYVFSYIWANDGDVQTALHVRKGTIEHWARCNLSLSYTQNVVCTVPYHKSLIKNGYQVLIYSGDHDMKIPYLGTIAWVKSLNLSIHRKWEPWYVDEQVGGYTFGYTHKNYSLVYATVKGAGHTAPEYKPKECLAMISRWLARSPL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0509 472 ProSitePatterns Serine carboxypeptidases, histidine active site. 439 456 IPR033124 GO:0004185
Glsi01g0509 472 FunFam Carboxypeptidase 323 471 - -
Glsi01g0509 472 FunFam Serine carboxypeptidase-like 19 17 288 - -
Glsi01g0509 472 Gene3D alpha/beta hydrolase 20 471 IPR029058 -
Glsi01g0509 472 FunFam Carboxypeptidase 371 469 - -
Glsi01g0509 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
Glsi01g0509 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 439 452 IPR001563 GO:0004185|GO:0006508
Glsi01g0509 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Glsi01g0509 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Glsi01g0509 472 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 23 456 IPR001563 GO:0004185|GO:0006508
Glsi01g0509 472 Pfam Serine carboxypeptidase 28 468 IPR001563 GO:0004185|GO:0006508
Glsi01g0509 472 SUPERFAMILY alpha/beta-Hydrolases 24 471 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0509 Glsi-ChrGlsi01 5465213 5475165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0509 335 472 Calmodulin-binding Proteins AT2G22960 49.275 8.10e-45 153