Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0504 ATGGGTGCACCTAAGCAGAAATGGACACCAGAAGAAGAAGCGGCCCTTAAAGCTGGAATTGTTAAGCATGGGGCTGGAAAATGGTGCATGATACTTAAGGATCCAGATTTTAGTAGTGTGTTGTACATGCGGTCAAACATTGATCTTAAGGATAAATGGAGAAATATGTGCGTGATACCAAATGGATGGAACTCAAGGGACAAGTCTAGGTTAGGTATTAGAAAGGTGCAACAGTTCCCTGGACAGGAAGAGAATTCTGTAGCTTTTACTCCTTTAGTTGTGAGTGATGAGGAAATTGTGGATGTTAGGTCTCTTCACGATTCTAGAGATATGGTTCAGATTCCTGGTCCAAAGAGGTCTATTGCAAGATTGGATAACCGTATAATGGATGCAATTACTAACTTGAAGGAGCCTGGTGGTTCAAATAAGACAACTATTGCAGCATACATAGAGGACCAATATTGGGAACCTTCAGGCTTCAAAAGGTTATTGTCAGCAAAATTGAAGTATTTGACCACAAGTGGAAAACTCATCAAGGCCAAACGCAAGTATAGGATTGCACCTGCTCGAGCATATTCTGACAGAAGAAGAAACCTATCACTATTGGATGGAAGGCAGAGATTCTCTATGAAATTTGATGAGGATGAGGCTAATGTCCTTACCAAGTCTCAGATAGATTTAGAATTAGCACAGGTGAGATCTATGAATGCTCAAGAGGCAGCTTCAGTTGCTGCTCGAGCAGTTACAGAAGCAGAAGCTGCCATGACAGAAGCTGAAGAGGCTGCAAGGGAGGCAGAGGCTGCAGAAGCTGATGCAGAGGCAGCCCAAGCTTTTGCAGAAGCTTCCTTGAAAACACTGAAAGGGAGAAACACATCAAATATGATGATTCAAGCTTGA 897 0.4259 MGAPKQKWTPEEEAALKAGIVKHGAGKWCMILKDPDFSSVLYMRSNIDLKDKWRNMCVIPNGWNSRDKSRLGIRKVQQFPGQEENSVAFTPLVVSDEEIVDVRSLHDSRDMVQIPGPKRSIARLDNRIMDAITNLKEPGGSNKTTIAAYIEDQYWEPSGFKRLLSAKLKYLTTSGKLIKAKRKYRIAPARAYSDRRRNLSLLDGRQRFSMKFDEDEANVLTKSQIDLELAQVRSMNAQEAASVAARAVTEAEAAMTEAEEAAREAEAAEADAEAAQAFAEASLKTLKGRNTSNMMIQA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0504 298 FunFam Telomere repeat-binding factor 1 118 198 - -
Glsi01g0504 298 Gene3D - 2 58 - -
Glsi01g0504 298 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Glsi01g0504 298 FunFam Telomere repeat-binding factor 1 2 58 - -
Glsi01g0504 298 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Glsi01g0504 298 CDD SANT_TRF 6 57 - -
Glsi01g0504 298 SMART sant 4 59 IPR001005 -
Glsi01g0504 298 Gene3D - 118 196 IPR036388 -
Glsi01g0504 298 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi01g0504 298 SUPERFAMILY "Winged helix" DNA-binding domain 118 196 IPR036390 -
Glsi01g0504 298 Pfam linker histone H1 and H5 family 128 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi01g0504 298 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Glsi01g0504 298 PANTHER SINGLE MYB HISTONE 4 1 293 IPR044597 GO:0003691
Glsi01g0504 298 Coils Coil 244 278 - -
Glsi01g0504 298 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi01g0504 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0504 Glsi-ChrGlsi01 5284552 5289635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0504 1 298 Single Myb Histone (SMH) Gene Family AT1G49950 63.158 2.90e-99 292