Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0482 ATGGAGGCTACTGGGAGGATTTCTGAAGAGTGGAGTTCTCTTAGTGGATTGTACACAGCTGAGGAAGCTGACTTTATGACCCAGTTCCTTGGTAATGGTTCACTCCCAGAGGAGCTATATGAAAATTCCACTTCGGGATTTCCATATGCATTTTGGGGTCATGAATCGACAGTTGTGAGCGTGACAGACATCAATAATAACAGTTCATGCTTTCCTTCCAATATTGCTAATCCTAATTTTTTCTGTTTCTCACAAGGGAGTAGCTCCAGTAATGATAGTACTAGCAATATCTTCACCACTACAAGTGGTGGAAACTACTGCCCAAATGATCCAGTAACCAATTTTGACTCCATGTCCATGGGTTTTTCTTTGGGGGGTGCCAAATTTATCCCGAATGACCACTTAAGCCAACGGATAAATGAAAACACAGATGAAGAGTCAATTCTAGAACCAGGGAAAGGGTTTCTTATTGACAAGAATTTGCAGGCTAACAGGGAATGTGAAATACTAGTTTCTGAACCAGCAGAAAAGGGTAAAAGCAGCAATCTGGAAAACCCAGACAAAAGATCAAGGAGCTCATTGGAGGTCTCAAAGAACAAGAGGAATGTTAAATCAAAGAAGAATACAAAACCTGCTTCTGTAAGCAACAATGAAGAGGATAGAAGCCCTGGCATTCAGGGGCAGAGCTCGAGCAGTTGCTGCTCAGAGGATGATTCCAATGCTTCTCAGGAGCTAAATGGAGGAGCTTCTTCAAGTTTGAGTCCTGAAGATCCTGCAGCTGTCAAGTTGAACGGCAAATCAGTATCTAATAAAGGTCCTGCCGCTGATCCACAGAGTGTTTATGCAAGAAGAAGAAGAGAAAGAATAAATGAAAGGCTAAGAATCCTACAAAACCTTGTCCCCAATGGAACTAAGGTGGATATAAGCACCATGCTTGAGGAAGCTGTCCAGTATGTGAAATTTTTACAGCTACAAATCAAGGTTCTGAGCTCTGATGATCTGTGGATGTACGCTCCCATTGCTTACAATGGATTGAACATTGGACTAGACCTCAACATCACCCCAACAAAACCATAG 1077 0.4225 MEATGRISEEWSSLSGLYTAEEADFMTQFLGNGSLPEELYENSTSGFPYAFWGHESTVVSVTDINNNSSCFPSNIANPNFFCFSQGSSSSNDSTSNIFTTTSGGNYCPNDPVTNFDSMSMGFSLGGAKFIPNDHLSQRINENTDEESILEPGKGFLIDKNLQANRECEILVSEPAEKGKSSNLENPDKRSRSSLEVSKNKRNVKSKKNTKPASVSNNEEDRSPGIQGQSSSSCCSEDDSNASQELNGGASSSLSPEDPAAVKLNGKSVSNKGPAADPQSVYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSDDLWMYAPIAYNGLNIGLDLNITPTKP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0482 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 322 IPR011598 GO:0046983
Glsi01g0482 358 Pfam Helix-loop-helix DNA-binding domain 283 323 IPR011598 GO:0046983
Glsi01g0482 358 Gene3D - 277 336 IPR036638 GO:0046983
Glsi01g0482 358 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 171 331 IPR045843 GO:0003700|GO:0006355
Glsi01g0482 358 FunFam Basic helix-loop-helix transcription factor 274 331 - -
Glsi01g0482 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 338 IPR036638 GO:0046983
Glsi01g0482 358 SMART finulus 279 328 IPR011598 GO:0046983
Glsi01g0482 358 MobiDBLite consensus disorder prediction 208 253 - -
Glsi01g0482 358 MobiDBLite consensus disorder prediction 180 202 - -
Glsi01g0482 358 MobiDBLite consensus disorder prediction 172 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0482 Glsi-ChrGlsi01 4641997 4643724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0482 1 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 40.054 1.19e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi01g0482 HLH 8.1e-09 No_clan