Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0477 ATGTGGAAGCGGCTGAACAACCGAAGACATTTGGACGATAGGGCACTATCTGAGTTTGTGATGGCTTTGGAGGCTCTGAATTCTCCTACCATAACTCCCTATCAAGACGACGACGTTGACCTTCACTCCTTCGAGGCTTGGCCCAAGACGAATAAGCGCTCTAAACGGCAACGTCTTGATAACCACCACCATCCGACGGAAGAAGAGTATCTCGCTCTCTGCCTCATCATGCTAGCACACGGTGGGAACGACAACACCTCCCGTACTGAATCATCGCCAGTGTCGCGACAACCGCCAACAACATCACCGTCTCCTCCGATGAAGCCGTCTCACAGGTGTACTGTCTGTAACAAATCCTTTTCCTCTTACCAAGCACTCGGTGGCCACAAGGCCAGCCACCGCAAGTCCGCATCTGAATCCGCCGCCGCCGGCGGTGACAACTCCTCGGCCTCCAACTCCGCCACAACCACCGCCAGTGGCAAGATGCACCAGTGTTCCATCTGTCACAAGACTTTTCCCACCGGTCAAGCTCTCGGCGGCCACAAGCGCTGCCACTACGACGGCGGCAACAGCAGCGGCGTCATAACCTCCTCTGAGGGCGCCGGCACATCCAGCCACAGCCACAGCCACAGCCACCGTGGGTTTGACTTGAACCTCCCAGCACCCTTGACGGACTTTTTGGCTGGGGGATTCGGAGGCGCCGCCGTGAAGATTACGAAAAGTGGGGAACAAGAGGTGGAAAGCCCTCTGCCGGTATCCGCCAAGAAGGCGCGTTTGTTTATGGGGGAAGAAGACGGTGGGCCTGCGTCAGAGAATTGA 819 0.569 MWKRLNNRRHLDDRALSEFVMALEALNSPTITPYQDDDVDLHSFEAWPKTNKRSKRQRLDNHHHPTEEEYLALCLIMLAHGGNDNTSRTESSPVSRQPPTTSPSPPMKPSHRCTVCNKSFSSYQALGGHKASHRKSASESAAAGGDNSSASNSATTTASGKMHQCSICHKTFPTGQALGGHKRCHYDGGNSSGVITSSEGAGTSSHSHSHSHRGFDLNLPAPLTDFLAGGFGGAAVKITKSGEQEVESPLPVSAKKARLFMGEEDGGPASEN 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0477 272 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Glsi01g0477 272 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 52 221 IPR044653 GO:0003700
Glsi01g0477 272 FunFam Zinc finger protein ZAT10 108 185 - -
Glsi01g0477 272 MobiDBLite consensus disorder prediction 127 156 - -
Glsi01g0477 272 SMART c2h2final6 111 133 IPR013087 -
Glsi01g0477 272 SMART c2h2final6 163 185 IPR013087 -
Glsi01g0477 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Glsi01g0477 272 MobiDBLite consensus disorder prediction 82 113 - -
Glsi01g0477 272 MobiDBLite consensus disorder prediction 242 272 - -
Glsi01g0477 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 185 IPR013087 -
Glsi01g0477 272 MobiDBLite consensus disorder prediction 82 97 - -
Glsi01g0477 272 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Glsi01g0477 272 MobiDBLite consensus disorder prediction 141 156 - -
Glsi01g0477 272 Pfam C2H2-type zinc finger 111 135 - -
Glsi01g0477 272 Pfam C2H2-type zinc finger 163 187 - -
Glsi01g0477 272 SUPERFAMILY beta-beta-alpha zinc fingers 111 185 IPR036236 -
Glsi01g0477 272 Gene3D Classic Zinc Finger 109 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0477 Glsi-ChrGlsi01 4574119 4576256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0477 21 259 C2H2 Transcription Factor Family AT1G27730 50.598 2.94e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi01g0477 zf-C2H2_6 2.2e-11 CL0361