Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0460 ATGCTAAGGTCGTGCTATAGGCCGTTGGTGGAGCGTTGCTTTGGGCGGCAAGGTTGCGGCAGCGACGGTCTTCTATGGCACACGGACTTGAAGCCACACGCCTCCGGCGACTTCTCCATCGCCGTCGCTCAGGCGAATAGCAGTCTCGAAGATCAGAGCCAAGTCTTCACGTCTCCTTCCGCCACCTACATCGGTGTCTACGATGGTCATGGCGGTCCTGAAGCTTCTAGATTCGTCAACAGACGCTTATTTCCTTATTTAAACAAATTTGTCACTGAACAAGGGGGACTATCGGTGGATGTGATAAAAAAGGCGTTTAATGCCATTGAGGAGGATTTCTTGCTTTTGGTGAAGCGATCATTGCCCTTCAGTCCCCAAATTGCTTTAGTAGGATCATGCTGTCTTCTTGGTGCAATTGCTAATAATGTATTGTATGTTGCAAACCTTGGAGACTCTAGAGTAGTTCTTGGAAGGAAATCATCAGAGAGCCATAAAAGTCCGGTGGTGGCACAGCGGTTGTCAACTGATCATAACGTAGCTGTTGAGGAGGTGAGGAGAGAGGTAGAATCCCTCCATCCTGATGACGCACACATTGTCGTTTATAGCCGAGGAGTTTGGAGAATTAAGGGCATTATACAGGTTTCTAGATCTATTGGGGATGTGTATCTCAAGAGACCTGATTTTTATAGAGACCCAGTTTTTCAGCAATTTGGAAACCCTGTTCCTTTGAAACGTCCAGTAATGACGGCTGAGCCATCAGTCATAATTAGGGAGCTTGAGCCACAAGATTTATTCCTGATATTTGCATCAGATGGCCTTTGGGAACAATTAAGTGATGAAGCAGCAGTTGAGATTGTTTACAAATATCCAAGAGCAGGAATCGCCAAGAGATTGGTGAGAGCTGCTCTTCAAGAAGCTGCGAAGAAGAGAGAAATGAGATATGATGACATAAAGAAAATTAACAAGGGAGTAAGAAGACTTTTCCATGATGATATCACTGTTATTGTAATGTACCTTGATCACCATGAGGGCTCCTCTAATGTTAGGATTAAGAAAAATGCTCTTGGTAGCACAAGTGCTCCTGTTGATATTTTCTCTTCAAACGCCGATGAAGCAGAACAGAGTATTCTTGGTACAGAGGCCTAA 1146 0.4476 MLRSCYRPLVERCFGRQGCGSDGLLWHTDLKPHASGDFSIAVAQANSSLEDQSQVFTSPSATYIGVYDGHGGPEASRFVNRRLFPYLNKFVTEQGGLSVDVIKKAFNAIEEDFLLLVKRSLPFSPQIALVGSCCLLGAIANNVLYVANLGDSRVVLGRKSSESHKSPVVAQRLSTDHNVAVEEVRREVESLHPDDAHIVVYSRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPVFQQFGNPVPLKRPVMTAEPSVIIRELEPQDLFLIFASDGLWEQLSDEAAVEIVYKYPRAGIAKRLVRAALQEAAKKREMRYDDIKKINKGVRRLFHDDITVIVMYLDHHEGSSNVRIKKNALGSTSAPVDIFSSNADEAEQSILGTEA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0460 381 ProSiteProfiles PPM-type phosphatase domain profile. 37 339 IPR001932 -
Glsi01g0460 381 CDD PP2Cc 42 339 IPR001932 -
Glsi01g0460 381 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169
Glsi01g0460 381 PANTHER PROTEIN PHOSPHATASE 36 337 IPR015655 GO:0004722|GO:0006470
Glsi01g0460 381 Pfam Protein phosphatase 2C 58 308 IPR001932 -
Glsi01g0460 381 Gene3D - 28 348 IPR036457 -
Glsi01g0460 381 FunFam Probable protein phosphatase 2C 42 28 347 - -
Glsi01g0460 381 SUPERFAMILY PP2C-like 45 341 IPR036457 -
Glsi01g0460 381 SMART PP2C_4 31 337 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0460 Glsi-ChrGlsi01 4058383 4060729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0460 1 346 PP2C-type Phosphatase Gene Family AT3G51370 54.648 4.62e-142 407