Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0446 ATGACTGGACATTCTGTCATTCAACAACCCGCAGCACCTCAATGTGAGTCAGGAAAGAGTTGCGGGTCTGGAGAAGGTTCATGCCTTAAACAAAGTCCCTTGGAACAAGTTTCTGGCTGTTTATCTAATGATAAATCAATTAATGAATCTCAACCGGCCTCCGAAAATGTTCAAAATGAACCTGTAGAAGTAAATGATGCAGTTGGCAGCTTCCCTGTTGTTAAAGACCCAATGCAATTAGTTCCTGTTCAAGTGACCGTGAGTTATGGGAATGAACAATTAGATACACCATCTGGAGATGTTGCTAAAATTATGGCAACTCATATACAGTTGGGGCGCAAAAATAAAATAAGATCCAAATCATTGAAGAAGAAATACATGCTAAGGTCATTATATAGCAATGGCAGAGTTTTGCGGTCAAAGACAAGAGGAAAAACTAAGTCACCTGAATCAAATAGTAATCTGGTTAATGTAATAAATGATGGAGAGAAGAGAAAAGGGAGGAAGAAGAGGAAAAAGAGACTAGGAGAGGGAGAGGGAATCACTGATGAATTTTCAAGAATCAGAGCTCACCTAAGATATTTATTAAAACGAGTGAGCTACGAGCAAAGTTTGATCGATGCTTATTCTGCTGAGGGCTGGAAAGGATGCAGCATTGAAAAACTAAAGCCCGAGAAGGAGCTTCAAAGGGCCAAGTCAGAAATACTTAGACGGAAATTAAAAATCAGGGATCTGTTTCGACATCTGGATACATTGTGTTCTGAAGGAAGGCTTCCAGAATCTTTGTTTGATTCTGAAGGAGAGATAGGCAGCGAAGATATATTCTGTGCAAAATGTAGGTCCAAAGACTTGACCAGTGATAATGATATAGTACTCTGTGATGGTGCTTGCGACCGTGGATTTCACCAGTTCTGTTTGGAACCTCCACTGTTAACTGAAAACATTCCACCTGACGATGAGAGTTGGCTATGCCCTGGATGTGATTGCAAAGATGACTGTGTCGAACTCCTAAATGAATTTTCTGGAACGAGTCTCTCTGCTAGTGACACTTGGGAGAGGGTTTTTCCTGAAGCAGCTGCTGTTGCTGGAGATGATGTAAATCACAACTTGGGACTTCCTTCAGATGATTCTGATGATGACGATGACGATGATTATGATTATAATCCTGATGTTCCAGAAGACAAGAGGATGGAAGGAGGTGAATCAAGTTCTGGTGAATCTGAGTATGCTTCTGCTTCTGAAAAATTGGAAGATCAACGTAAAGAAGATAAGTGCTTGGGCCTTCCTTATGATGATTCAGTGGATGATGATTATGATACTAATGTTCCAAATCCTGACAAAAAAGACACAGAAGAAAGTTCAAGCAGCGATTTCACGTCTGATTCCGAGGATCTTGCTGCTTTAATTAAGGATAACAAGCTCTCTGCTGGACAAGAGGAAGATCCTCTATCTGCCTCCTCGGATGATATTAAGCAGTTTAAAGGTTCAGGTAGACAAAGATGTAAAGCTGGTAAGAAGCAAACTCTAGCTGATGAACTGTTAACTTTACTAGAACCAGATCCTTGCCAAGAGGGTTCCACTCCTATTTCTGGGAAAAGACACGTGGAAAGATTGGACTACAAAAAACTGTATGATGTGAGTTCCTTTTCATGGCATAAGGAGACATACAAAAACGTTCAGTCTGATACTAGTGATGATGAAGATTGGGCTGACACTGCTACTGCAAGTAGAAGAAAGAAACTCACTAGCAAAGCCTCTACGGTGGACCATATGCAGAAAGAAACTTCACATACTCCTAATAGAAATACTCATCAGAATAAAGTTGAGAATACAGATAAATTACTTGAAGTCTCTGGGAATGCTTGTTCTAGTGATAAAAAACCTGGATCTTCGACTTACAGAAGGCTGGGGGAAGCTGTAGTTCAGAGGCTTTACAAGTCCTTTGAAGAAAATCAGTACCCAGTTCGAGCCACAAAAGAAAGCTTGGCACAAGAACTTGGACTCACTTTCCAGCAGGTTAGCAAATGGTTTGAGAATACACGATGGAGCTTTCGGAATTCATCGCATGTGGAAGCAAGCGCAGGTGGGAATGCTTTGGAGCAGGCTACTAGCAGCAAAGCTGAAAATCAGGGGCCAATTGGTGGTGAGGAGGAGAGGGGCTGTGAATTGGTTTCCCAGGAGTGCAGTGGAGAAAAATCGAAAACCCCCTGCTTTAGAAAGAGGAAGCATAAGTCAAATTCGGAGGCATTGGATGCAAATCCTGACGTTGATAGTGCAGCAACAGAGCCTCCTGCTGGTTCTTCAGGAGCTCATGAAGTGCAAAGTGGTCACAAAATGAAGAAGAGGAAAAGAAAATGTTAA 2361 0.4159 MTGHSVIQQPAAPQCESGKSCGSGEGSCLKQSPLEQVSGCLSNDKSINESQPASENVQNEPVEVNDAVGSFPVVKDPMQLVPVQVTVSYGNEQLDTPSGDVAKIMATHIQLGRKNKIRSKSLKKKYMLRSLYSNGRVLRSKTRGKTKSPESNSNLVNVINDGEKRKGRKKRKKRLGEGEGITDEFSRIRAHLRYLLKRVSYEQSLIDAYSAEGWKGCSIEKLKPEKELQRAKSEILRRKLKIRDLFRHLDTLCSEGRLPESLFDSEGEIGSEDIFCAKCRSKDLTSDNDIVLCDGACDRGFHQFCLEPPLLTENIPPDDESWLCPGCDCKDDCVELLNEFSGTSLSASDTWERVFPEAAAVAGDDVNHNLGLPSDDSDDDDDDDYDYNPDVPEDKRMEGGESSSGESEYASASEKLEDQRKEDKCLGLPYDDSVDDDYDTNVPNPDKKDTEESSSSDFTSDSEDLAALIKDNKLSAGQEEDPLSASSDDIKQFKGSGRQRCKAGKKQTLADELLTLLEPDPCQEGSTPISGKRHVERLDYKKLYDVSSFSWHKETYKNVQSDTSDDEDWADTATASRRKKLTSKASTVDHMQKETSHTPNRNTHQNKVENTDKLLEVSGNACSSDKKPGSSTYRRLGEAVVQRLYKSFEENQYPVRATKESLAQELGLTFQQVSKWFENTRWSFRNSSHVEASAGGNALEQATSSKAENQGPIGGEEERGCELVSQECSGEKSKTPCFRKRKHKSNSEALDANPDVDSAATEPPAGSSGAHEVQSGHKMKKRKRKC 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0446 786 ProSiteProfiles 'Homeobox' domain profile. 627 687 IPR001356 GO:0003677
Glsi01g0446 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 332 IPR013083 -
Glsi01g0446 786 SMART HOX_1 630 691 IPR001356 GO:0003677
Glsi01g0446 786 SMART PHD_3 275 328 IPR001965 -
Glsi01g0446 786 SUPERFAMILY FYVE/PHD zinc finger 265 333 IPR011011 -
Glsi01g0446 786 Pfam PHD-finger 275 330 IPR019787 -
Glsi01g0446 786 SUPERFAMILY Homeodomain-like 631 688 IPR009057 -
Glsi01g0446 786 CDD homeodomain 634 688 IPR001356 GO:0003677
Glsi01g0446 786 Gene3D - 630 695 - -
Glsi01g0446 786 MobiDBLite consensus disorder prediction 411 431 - -
Glsi01g0446 786 MobiDBLite consensus disorder prediction 440 455 - -
Glsi01g0446 786 MobiDBLite consensus disorder prediction 693 710 - -
Glsi01g0446 786 MobiDBLite consensus disorder prediction 40 59 - -
Glsi01g0446 786 MobiDBLite consensus disorder prediction 558 597 - -
Glsi01g0446 786 FunFam Homeobox protein HAT3.1 256 334 - -
Glsi01g0446 786 MobiDBLite consensus disorder prediction 1 27 - -
Glsi01g0446 786 FunFam Homeobox protein HAT3.1 629 698 - -
Glsi01g0446 786 MobiDBLite consensus disorder prediction 365 505 - -
Glsi01g0446 786 MobiDBLite consensus disorder prediction 557 609 - -
Glsi01g0446 786 Pfam Homeodomain 638 682 IPR001356 GO:0003677
Glsi01g0446 786 CDD PHD_PRHA_like 275 327 IPR045876 -
Glsi01g0446 786 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 101 785 - -
Glsi01g0446 786 MobiDBLite consensus disorder prediction 138 176 - -
Glsi01g0446 786 ProSiteProfiles Zinc finger PHD-type profile. 273 330 IPR019787 -
Glsi01g0446 786 ProSitePatterns Zinc finger PHD-type signature. 276 327 IPR019786 -
Glsi01g0446 786 MobiDBLite consensus disorder prediction 693 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0446 Glsi-ChrGlsi01 3890789 3894020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0446 131 744 Homeobox Transcription Factor Family AT3G19510 44.375 5.48e-131 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Glsi01g0446 PHD 1.3e-10 CL0390