Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0410 ATGCAAGCCGATGCTAAGCTTATGAGCAAAATTCGCAAGCCAAACAGTATGGGAAATGATTCCATGACAAGGATGATGAGACTCACACCCCTTCGTGACGAGCTGCACGGCCACCATGTAGTCAACTTCAATCTTCAACTTCCGGAAACCGAGCTTCCAACCAATTTGAAGAGCACACAAAACTCCCCAAACTTTGAGGCAGAGAGAACAACAATAGGCTGGGCAGCCAGAGATCCATCTGGTATTCTCTCCCCATACAAATTTACTCTAAGAAACACAGGCCCCGAAGATGTTTACATCAAAGTTCATTACTGTGGAATTTGCCATACTGATATCCATCAAATCAAAAATGATCTTGGCATGTCCAAATATCCCACGGTTCCTGGGCATGAAGTTGTTGGCAAGGTAGTCGAGGTGGGTTCAAATGTGACCAAATTCAGAGCAGGAGATGTGGTGGGGGCCGGACTCATCGTCGGGTGCTGTAGAAATTGTGGGGCATGCCAATCTGATAATGAGCAATACTGCAGCAAGAAGATCTGGTCCTACAACGACGTCTATACCGATGGCAAACCCACCCAAGGAGGCTTCGCCGAAACCATGGTCGTCCACCAAAAGTTTGTGGTGAAAATACCAGAGGGGTTGGCGCCGGAGCAAGCGGCTCCACTGTTGTGCGCGGGCGTGACGGTGTACAGCCCATTGTCACACTTGGGGTTGAAACGGAATGGGCTAAGAGGAGCAATATTGGGGCTGGGAGGAGTGGGGCATATGGGGGTGAAGATAGCAAAGGCAATGGGTCACCATGTGACTGTTATAAGTTCTTCTGAGAAGAAGAAAGCGGAGGCGCTCGAGGTCCTCGGAGCTGACCAATATCTGGTTAGCTCGGACGCCACTCTGATGAAAGAAGCTGCTGATTCACTAGACTATATCATCGACACTGTGCCTGCGGATCACCCTCTCGAGCCTTATCTCTCGTTGCTGAAGGTTGATGGGAAGTTGATCCTGGTGGGCGTTGCTACGACCCCTCTGCAATTCATAAGCCCCACGATCATCCTTGGAAGGAAGACAATAACGGGAAGCTTCGTAGGGAGCATGAAGGAGATGGAAGAGATGCTTGAGTTCTGGAAAGAGAAAGGTCTGAGTTGCATGGTTGAAGTGGTAAAGATGGATTACATTCACGAAGCCCTCGAGAGATTGGAGAAGAACGATGTGAGATACAGATTCGTTTTGGATGTTGCAGGCAGCAAACTGGGTGAATGA 1257 0.4916 MQADAKLMSKIRKPNSMGNDSMTRMMRLTPLRDELHGHHVVNFNLQLPETELPTNLKSTQNSPNFEAERTTIGWAARDPSGILSPYKFTLRNTGPEDVYIKVHYCGICHTDIHQIKNDLGMSKYPTVPGHEVVGKVVEVGSNVTKFRAGDVVGAGLIVGCCRNCGACQSDNEQYCSKKIWSYNDVYTDGKPTQGGFAETMVVHQKFVVKIPEGLAPEQAAPLLCAGVTVYSPLSHLGLKRNGLRGAILGLGGVGHMGVKIAKAMGHHVTVISSSEKKKAEALEVLGADQYLVSSDATLMKEAADSLDYIIDTVPADHPLEPYLSLLKVDGKLILVGVATTPLQFISPTIILGRKTITGSFVGSMKEMEEMLEFWKEKGLSCMVEVVKMDYIHEALERLEKNDVRYRFVLDVAGSKLGE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0410 418 SMART PKS_ER_names_mod 81 409 IPR020843 GO:0016491
Glsi01g0410 418 FunFam probable cinnamyl alcohol dehydrogenase 74 231 - -
Glsi01g0410 418 FunFam Cinnamyl alcohol dehydrogenase 225 381 - -
Glsi01g0410 418 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 215 379 IPR036291 -
Glsi01g0410 418 SUPERFAMILY GroES-like 77 242 IPR011032 -
Glsi01g0410 418 PANTHER ALDEHYDE REDUCTASE 66 413 IPR047109 GO:0016616
Glsi01g0410 418 MobiDBLite consensus disorder prediction 1 22 - -
Glsi01g0410 418 Pfam Alcohol dehydrogenase GroES-like domain 96 210 IPR013154 -
Glsi01g0410 418 FunFam Putative cinnamyl alcohol dehydrogenase 6 382 411 - -
Glsi01g0410 418 CDD CAD1 73 410 IPR047109 GO:0016616
Glsi01g0410 418 Pfam Zinc-binding dehydrogenase 252 373 IPR013149 -
Glsi01g0410 418 Gene3D - 225 381 - -
Glsi01g0410 418 Gene3D - 74 411 - -
Glsi01g0410 418 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 129 143 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0410 Glsi-ChrGlsi01 3489276 3498090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0410 68 418 Monolignol Biosynthesis Gene Families AT3G19450 74.074 2.30e-176 495