Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0407 ATGAATGAAGATTTGACAATGGAGGCGTTGCAGCGAGAAGTAGATCGGGTCAAGGGTCCCTGGAGCCGTGAGGAGGACGAGGTGTTGACGAAGCTCGTTCAACGGTACGGCCCTCGGAATTGGTCGGTGATTAGCAAGTCGATCCCTGGTCGATCGGGGAAGTCGTGCCGCCTCCGGTGGTGCAACCAGCTCTCGCCGGAGGTGGAGCGTAGGGCCTTCAGTCCGGAGGAGGACGACATCATCGTCCAGGCCCACGCCAAGTACGGCAACAAGTGGGCCACCATAGCCAAGCTCCTCAACGGCCGTACGGACAACGCCATCAAGAACCATTGGAACTCGACCTTGAAGCGCAAGTACTCGTGCTTGGTCGGGGACGCCGACGAGTCTCCGTTCCAACCGCTGAAGAAGCTAGCCACCGCAGGTCGATCTCCGGCGATGCCGTCGATCTCAAGTAGTCCGTCTGGATCTGATGTCAGCGAATCGAGTCTTCATGTAATTTCTCCTTCGACAGTGATTCGACCTGTAGCGAGAACGGGAGCGATCTTGCCGCCTTCACAGCAAATGGAGTCAAGTCCGAGTCGCATCTTTAACAACGAGCCGTCCACAGAACTCACTCTGTCCCTTCTTCGAGCCGAGTCGCACGAGTTACGGATGCGTGAAGATTCTGGTCCTACAGCAGAACATGATCAGAAACCATTATCAACGTCAACACCATGGGAGAAAAAGTACAGTGGAATGACAACATTTGGGCCAGAGTTACTGTCAGTGATGAAGGAAATGATTAGGGATGAGAAAGCTACTTTTGAGGATTTTGATGTTCTTATAAAACAGAGAAAAGAATTTGAAAAGGGAAAACGTTTTTATGATTTTCGTTTTGGTGAAAGAAAAAAGAGAGTAATGGGTGAGGAGGGGAATAATGGTACGGTGTTTGTACAGAACGTCAAAGGTGAGCAGTTCTATTTGCGTAAAAAAGGATCAATTCCAATTGAAACATTAGTGGACGAAAATGAGATGCTCCTCCAAAATAGAGATGGCTAA 1038 0.501 MNEDLTMEALQREVDRVKGPWSREEDEVLTKLVQRYGPRNWSVISKSIPGRSGKSCRLRWCNQLSPEVERRAFSPEEDDIIVQAHAKYGNKWATIAKLLNGRTDNAIKNHWNSTLKRKYSCLVGDADESPFQPLKKLATAGRSPAMPSISSSPSGSDVSESSLHVISPSTVIRPVARTGAILPPSQQMESSPSRIFNNEPSTELTLSLLRAESHELRMREDSGPTAEHDQKPLSTSTPWEKKYSGMTTFGPELLSVMKEMIRDEKATFEDFDVLIKQRKEFEKGKRFYDFRFGERKKRVMGEEGNNGTVFVQNVKGEQFYLRKKGSIPIETLVDENEMLLQNRDG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0407 345 MobiDBLite consensus disorder prediction 139 161 - -
Glsi01g0407 345 Pfam Myb-like DNA-binding domain 18 64 IPR001005 -
Glsi01g0407 345 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Glsi01g0407 345 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Glsi01g0407 345 Gene3D - 72 118 - -
Glsi01g0407 345 FunFam Transcription factor MYB44 72 118 - -
Glsi01g0407 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Glsi01g0407 345 CDD SANT 72 115 IPR001005 -
Glsi01g0407 345 FunFam MYB transcription factor 18 69 - -
Glsi01g0407 345 Gene3D - 17 69 - -
Glsi01g0407 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 64 IPR017930 -
Glsi01g0407 345 MobiDBLite consensus disorder prediction 216 242 - -
Glsi01g0407 345 MobiDBLite consensus disorder prediction 228 242 - -
Glsi01g0407 345 SMART sant 69 117 IPR001005 -
Glsi01g0407 345 SMART sant 17 66 IPR001005 -
Glsi01g0407 345 PANTHER MYB PROTEIN-RELATED 18 189 - -
Glsi01g0407 345 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Glsi01g0407 345 MobiDBLite consensus disorder prediction 144 161 - -
Glsi01g0407 345 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Glsi01g0407 345 CDD SANT 20 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0407 Glsi-ChrGlsi01 3468467 3470408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0407 11 268 MYB Transcription Factor Family AT4G37260 47.810 1.01e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi01g0407 Myb_DNA-binding 1.6e-15 CL0123