Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0403 ATGAGCCTTTCCTCCAAGTATCTCCATCTCTGGTGGAGGGAAGTTTCGTTCTTTGTTGTTGTTCTTCTTCTTCGGTCAGATGCTCTCAACTCTGATGGGGTTTCTTTGCTTTCCTTCAAATATTCCATCCTCAGCGACCCATTATCAGTGCTAGAGAGCTGGAACTTCTACGACGAAACTCCATGTTCATGGAATGGTGTTACCTGCACTGACATGTTCGGAGTGACTAGCTTAGTTCTTCCCGATAGCCAGCTTCTGGGTTCGATTTCAGAAGACCTGGGCATGATCGAAAACCTTCGCCATCTCGATCTTTCCAACAATTTCCTCAATGGGTCTCTACCCAGCTCTATCTTCAATGCTTCAGAGCTTCGGGTGCTTTCTCTAGCCAACAATGTAATCTCAGGTGAGCTACCTGGGTTGATTGGTGAACTGAAAAGTCTTCAACTTCTCAACCTTTCTGACAATGCTTTTGCTGGGTTAATCCCAGAAACTCTCGCTTATTTGAAAAATCTAACCGTTGTTTCTTTGAGGAGCAACTATTTTTCTGGGAAAATTCCAAGTGGTTTCAACTCTCTGGAAGTTCTAGATCTGTCTTCCAACTTGCTGAATGGCTCTTTGCCAACTGACTTTCTTGGTGACAACTTGCGCTTCTTGAATCTCTCTTACAATAAGATTTCAGGAACAATCCCTCCTGAATTTGCAAAAGATGTTCCTGGAAACTCCACAATCGATCTCTCCTTCAACAATCTAACAGGACCATTACCAGAATCTCTGGCTTTGCTGAACCAGAAAACAGAGTTTCTATCTGGAAATGGTGGTCTATGTGGGAAGCCTCTGAAAATCCTCTGCTCTATTCCTTCTACTTTAACTTCTCCACCTAATATCACCACCACATCGTCATCTCCAGCAATTGCGGTCATACCGAGAACAACTGACACAAACCCCGAAACAAATTCAACAGAAAGAACCCACAGTGGGACCCCAAGTGGCCTAAAACCAGCCACAATAGTAGGCATCATAGTCGGAGACTTGGCCGGCGTAGGAGTCCTAGCCATGATCATTCTTCTAGTCTACCATCAAAGAAAGAGAAGATATCCGAAATCTAGAACAGAACAAGATCCAGATGGGAAAACGCCTATTCTTCCATGCTCCTGCTTGAAAATCAAAGAAGAAGAGACTTCAGAAGCTGCTGGTTCTGATAGTGACCATGAGAATACCAAGATTGACAGGACAACCTCGAATCATCATGGAAATCTTCAAAAAGAGGTAGCTCTTGTAATAGTGGACGCAGACACAAAACTTGACCAGGAGACTTTGCTCAAGGCTTCAGCTTATGTTTTGGGAACTAGCCGTACGAGTATAGTATATAAGGCAGTGCTTGAGGATCAAAGGACTTTTGTTGTAAGAAGAATTGGGGAATGTGGGGTTGAGAGAATGAAGGATTTTGAGAACCATGTGAGAGCCATTGCGAAGATTCGCCATCCTAACTTGGTTAAGGTTCGGGGTTGCTGCTGGGGAGAGGAAGAAAAGCTTGTAATCTCTGACTATATTCCCAATGGCAGCCTCGCGAGCATCAATCTCAGAAGAGCAGGGTCTTCTTCTCCATTGAACTTGCCCTTCGAGATGCGGCTGAAAATAGCAAGAGGGATTGCACGAGGCTTAGCATTCATCCATGAGAAGAAGCACGTCCATGGCAACCTTAAACCCAGCAACATCCTATTAAACTCCGAAACGGAACCCATCATCAGCGATTTTGGGCTCGACCGCCTCCTCGGATGCAAAAAGGGTTCAGCTCGGCAACTGGTGAAGCAAAGAAGCCAACAAGACCATAACAATGGTTCGAGCCCCTGCGCACCCGTGGGTTCATCTAGCGGGACACAATCGCCCTATCAGGCACCAGAGTCGCGGCAGAACATCCAACCCAACCCCAAGTGGGACGTGTACTCATTTGGCATTCTGTTGTTAGAGCTTCTGAGTGGAAGGGTTTTCTCGGACCGGGAGTTAGACCAGTGGTCTTCAGCCGGTTCAGTAGCAGAGGAGAAAAACCGGGTTGTGAGGATGGCTGACGTAGGCATCAAGGGTGAGATGGAAGCCAGGGAAGATGCCATCTTGGTGTGCTTCAAGTTAGGGTTTAGTTGTGCCTCTCTTAAGCCACAAAAGAGACCGTCCATGAAAGAGGCTTTACAGATTTTAGAGAAAATCCCTCCCGCCACTATTTCCTCACAATAA 2229 0.4603 MSLSSKYLHLWWREVSFFVVVLLLRSDALNSDGVSLLSFKYSILSDPLSVLESWNFYDETPCSWNGVTCTDMFGVTSLVLPDSQLLGSISEDLGMIENLRHLDLSNNFLNGSLPSSIFNASELRVLSLANNVISGELPGLIGELKSLQLLNLSDNAFAGLIPETLAYLKNLTVVSLRSNYFSGKIPSGFNSLEVLDLSSNLLNGSLPTDFLGDNLRFLNLSYNKISGTIPPEFAKDVPGNSTIDLSFNNLTGPLPESLALLNQKTEFLSGNGGLCGKPLKILCSIPSTLTSPPNITTTSSSPAIAVIPRTTDTNPETNSTERTHSGTPSGLKPATIVGIIVGDLAGVGVLAMIILLVYHQRKRRYPKSRTEQDPDGKTPILPCSCLKIKEEETSEAAGSDSDHENTKIDRTTSNHHGNLQKEVALVIVDADTKLDQETLLKASAYVLGTSRTSIVYKAVLEDQRTFVVRRIGECGVERMKDFENHVRAIAKIRHPNLVKVRGCCWGEEEKLVISDYIPNGSLASINLRRAGSSSPLNLPFEMRLKIARGIARGLAFIHEKKHVHGNLKPSNILLNSETEPIISDFGLDRLLGCKKGSARQLVKQRSQQDHNNGSSPCAPVGSSSGTQSPYQAPESRQNIQPNPKWDVYSFGILLLELLSGRVFSDRELDQWSSAGSVAEEKNRVVRMADVGIKGEMEAREDAILVCFKLGFSCASLKPQKRPSMKEALQILEKIPPATISSQ 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0403 742 SUPERFAMILY L domain-like 33 281 - -
Glsi01g0403 742 Gene3D Phosphorylase Kinase; domain 1 404 516 - -
Glsi01g0403 742 FunFam Leucine-rich repeat receptor-like protein kinase 192 285 - -
Glsi01g0403 742 Gene3D Transferase(Phosphotransferase) domain 1 517 740 - -
Glsi01g0403 742 MobiDBLite consensus disorder prediction 601 639 - -
Glsi01g0403 742 Gene3D Ribonuclease Inhibitor 189 285 IPR032675 -
Glsi01g0403 742 Pfam Leucine Rich Repeat 214 234 IPR001611 GO:0005515
Glsi01g0403 742 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Glsi01g0403 742 MobiDBLite consensus disorder prediction 305 330 - -
Glsi01g0403 742 MobiDBLite consensus disorder prediction 392 414 - -
Glsi01g0403 742 Pfam Protein kinase domain 447 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0403 742 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Glsi01g0403 742 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 189 735 IPR046959 -
Glsi01g0403 742 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 191 - -
Glsi01g0403 742 SMART LRR_typ_2 96 120 IPR003591 -
Glsi01g0403 742 SMART LRR_typ_2 189 212 IPR003591 -
Glsi01g0403 742 SMART LRR_typ_2 214 235 IPR003591 -
Glsi01g0403 742 SMART LRR_typ_2 144 167 IPR003591 -
Glsi01g0403 742 MobiDBLite consensus disorder prediction 305 331 - -
Glsi01g0403 742 Pfam Leucine rich repeat 98 156 IPR001611 GO:0005515
Glsi01g0403 742 SUPERFAMILY Protein kinase-like (PK-like) 446 734 IPR011009 -
Glsi01g0403 742 ProSiteProfiles Protein kinase domain profile. 441 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0403 742 ProSiteProfiles Leucine-rich repeat profile. 98 120 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0403 Glsi-ChrGlsi01 3434244 3436572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0403 15 736 Receptor kinase-like Gene Family AT4G37250 50.663 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi01g0403 Pkinase 1.5e-27 CL0016