Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0395 ATGATTACCGGTGGTCAGCTAGCTATTGGGAAAGAGATTAGACGCAGGCTTGGCATGGGAGTTAACATGTACCCTTCTTCTTCCCTCCTTGGGGAGCACAAGGATCAGTCTGTTGCTGCGCTTCCAATTGATGAGCTTATTGAGAAGGCTGATGGTTTTGCTAGGGTCTTTCCCGAGCACAAATATAAGATTGTGAAGAGACTCCAAGACAGAAAACACATATGTGGGATGACAGGAGATGGGGTGAACGATGCTCCTGCACTGAAAAGGGCAGATATTGGAATTGCAGTGGCTGACGCAACCGATGCAGCTCGAAGTGCGTCTGACATAGTCTTGACAGAACCTGGTTTGAGTGTGATTGTGAGTGCAGTGTTGACAAGCAGAGCCATTTTCCAAAGAATAAAGAACTACACCATCTATGCTGTTTCTATAACAATCAGAATCGTGCTGGGGTTCATGCTGCTTGCTCTTATCTAG 477 0.4633 MITGGQLAIGKEIRRRLGMGVNMYPSSSLLGEHKDQSVAALPIDELIEKADGFARVFPEHKYKIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRIKNYTIYAVSITIRIVLGFMLLALI 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0395 158 PANTHER CALCIUM-TRANSPORTING ATPASE 1 158 - -
Glsi01g0395 158 FunFam Plasma membrane ATPase 1 126 - -
Glsi01g0395 158 Gene3D - 116 158 - -
Glsi01g0395 158 Gene3D - 1 115 IPR023214 -
Glsi01g0395 158 PRINTS H+-transporting ATPase (proton pump) signature 109 134 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi01g0395 158 PRINTS H+-transporting ATPase (proton pump) signature 78 94 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi01g0395 158 PRINTS H+-transporting ATPase (proton pump) signature 50 66 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi01g0395 158 SUPERFAMILY HAD-like 1 124 IPR036412 -
Glsi01g0395 158 Pfam haloacid dehalogenase-like hydrolase 44 92 - -
Glsi01g0395 158 NCBIfam HAD-IC family P-type ATPase 53 157 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0395 Glsi-ChrGlsi01 3341906 3342465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0395 1 158 Primary Pumps ATPases AT5G62670 89.873 2.19e-94 291