Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0393 ATGGATTCAGTGCCTGCTGATACACCTAATTTACCTCCTAGTAAAGATCCCTCTACTTCACCTCCTGTTAAAGATCCTGAAGGTCAGACTGCCGCTTCTGCAGTCTCTGGACAAGATAATTCTGCACATGAGGCGCGATCTAAGCTATCTTCCACTGGCATATCATCTTGGGCCAAAAATTTGAAAATTCCCCAGCCATTTTCTGGCTCTCAAGATGACTCATCAAGTGGAAATGCTGGGAAATCACCTTTTTCACGCTTTACTAGTGGTTTAGCAATGCGGTTGTCTCCAAAATCTCCTCCATCAGATGACAGTTCCAATGAAACAACTGCTCAATCTAATTTGATTGAAAGTTTCACAAAAGGCCTGGTTGACTCTTCTAGGAATGCGGTGAAAGCTGTGCAGGTTAAGGCCCGACATGTTGTTTCTCAGAATAAACGTAGATACCAGGAGGGAGGATTTGATCTAGATATGACATACATCACTGAAAATATTATTGCTATGGGCTTCCCTGCTGGTGACATGAGCTCTGGGTTTTTTGGTTATGTAGAAGGGTTTTACAGAAATCAAATGGAAGAAGTGATCAAGTTTTTTGAGACTCATCATAAGGGCAAATACAAAGTATACAATCTTTGTTCTGAGCGGCTGTATGATGCATCATTATTTGAGGGGAAAGTGGCTAGTTTCCCATTTGATGACCATAATTGCCCACCGATTCAACTGATTATATCATTTTGTCAAAGTGCTTATTCATGGTTGAAACAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAAGCTGGAATGGCAAGGACAGGATTGATGATTTCTAGTCTTCTATTATTCTTAAAGTTCTTCCCAACTGCTGAGGAGTCCATTGACTATTACAATCAGAAAAGGTGTTTTGATGGAAAAGGACTTATTCTGCCTAGTCAAATTAGGTATGTCAAATATTTTGAACGTGTCTTGACTTACTTCAATGGAGAAAATCCTCCTGCTCGCAGATGCATGCTTAGGGGATTCCGGCTTCACAGGTGTCCTTACTGGATAAGGCCGTCTATAACTGTCTCGAATTATAGTGGTGTTTTGTTCTCAACCAAAAAGCATCCAAGAACCAAGGATCTTAATCCTGAAGATTTTTGGTTTAGTGCTCCAAAGAAGGGAGTGATGGTCTTTGCTTTGCCAGGGGAGCCTGGTCTTACAGAGTTGGCTGGGGACTTCAAAATCCATTTTCACGATCGCCAGGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAATAGGAAAATATTGAACACTAATGATCTTGACGGTTTTGACAAGAGAAAACTGCCTTCGCCTGGATTCCTGGTTGAGGTTGTGCTAGTGGATTATAATGGCAATGTTACAACATCCCAACCTGAAACTGTTGCAAACAAATCAGATGAGAGGTCAAGTAGTAGTCCTGCGCCAGTTGATACAAGCACCACGGCTTCAAATGCTGAAAAAGAGTCTGGGAATAGTGATAAAGATGATGTGTTTTCAGATGGCGAGGCAGAGGATTCTGCTTCTTCCAAAAGCAGGCAGACAAAAGCAGCTTCTCAAGCTGCTGGAACAGTTACTAATTCAGCCACTGGATCTGAGTCCAAAATTTCAAATCAAATGACTGGTTTAACTCATGCAACAGAACAAGTTTCTTTGGGAAATACAAGTGCTGCTCCAGTTCATAGTGCTAGTAAGCCGAAAAGTGATGATAACAGAACATTATCCAGTGTCGAGGCTCCCAGCTCAGAAAGCGAATTTAAGGCAATGGCTGCAGATGCATCTGTTTTTACATTCGGCGATGATGAAGACTACGAGAGTGAGTGA 1854 0.4164 MDSVPADTPNLPPSKDPSTSPPVKDPEGQTAASAVSGQDNSAHEARSKLSSTGISSWAKNLKIPQPFSGSQDDSSSGNAGKSPFSRFTSGLAMRLSPKSPPSDDSSNETTAQSNLIESFTKGLVDSSRNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNQMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIDYYNQKRCFDGKGLILPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLHRCPYWIRPSITVSNYSGVLFSTKKHPRTKDLNPEDFWFSAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKILNTNDLDGFDKRKLPSPGFLVEVVLVDYNGNVTTSQPETVANKSDERSSSSPAPVDTSTTASNAEKESGNSDKDDVFSDGEAEDSASSKSRQTKAASQAAGTVTNSATGSESKISNQMTGLTHATEQVSLGNTSAAPVHSASKPKSDDNRTLSSVEAPSSESEFKAMAADASVFTFGDDEDYESE 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0393 617 MobiDBLite consensus disorder prediction 1 86 - -
Glsi01g0393 617 MobiDBLite consensus disorder prediction 23 85 - -
Glsi01g0393 617 MobiDBLite consensus disorder prediction 465 617 - -
Glsi01g0393 617 MobiDBLite consensus disorder prediction 499 520 - -
Glsi01g0393 617 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 124 577 - -
Glsi01g0393 617 SMART PTEN_C2_2 331 459 IPR014020 -
Glsi01g0393 617 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Glsi01g0393 617 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Glsi01g0393 617 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Glsi01g0393 617 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Glsi01g0393 617 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Glsi01g0393 617 MobiDBLite consensus disorder prediction 521 572 - -
Glsi01g0393 617 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
Glsi01g0393 617 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 300 IPR000387 GO:0016311|GO:0016791
Glsi01g0393 617 MobiDBLite consensus disorder prediction 465 498 - -
Glsi01g0393 617 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 132 329 - -
Glsi01g0393 617 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0393 Glsi-ChrGlsi01 3325378 3330487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0393 6 617 Protein tyrosine phosphatase (PTP) family AT3G19420 67.955 0.0 858