Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0384 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATACCGGGGGCTAACGGTGCTCCGGCAACTGGCGGCGGAAACCAGTTCTTGACGATATCGCTTTATGTCGGTGATCTTGACGTGAACGTTACGGATTCGCAGCTGTATGACCTGTTTAGCCAAGCGGGTCAGGTTGTCTCTGTTAGGGTTTGTAGGGATTTGACCAGCCGGAGATCACTTGGTTACGGTTATGTTAATTATAACAGCGCGCAAGAGGCTGCCAGAGCATTGGATGCGCTGAACTTCACTCCTCTTAATAATAAGCCAATCCGTATTATGTATTCACATCGTGATCCCAGTATTCGAAAAAGTGGGACAGGAAATATATTTATCAAGAATCTGGATAAGACAATTGATCACAAAGCATTGCATGATACCTTTTCTGCATTTGGGAATATCCTTTCTTGCAAAGTAGCTACAGATTCATCTGGCCAGTCAAAAGGCTACGGCTTTGTACAATTTGATAATGAGGAATCTGCTCAAAAAGCCATAGAGAAGCTAAATGGTATGCTGTTGAATGATAAACAAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAAGTGTTATTGACAAAACAAAATTCAACAACGTTTTTGTCAAGAACCTATCAGAGTCAACCACCGATGAAGATTTGAAGAAGATTTTTGGTGAATATGGAACAATTACAAGTGCTGTAGTGATGAGGGATGGGGATGGAAAATCAAAGTGCTTTGGATTTGTGAACTTTGAGAATGCTGAAGATGCTGCCAGGGCCGTTGAGGCTCTTAATGGGAAAAAAATTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAACATGAGTTGAAAGTTAGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCTAACTTATATGTTAAAAATTTAGATGATAGCATAAGTGATGATAAACTTAGAGAGCTCTTCTCTCCATTTGGTACCATTACCTCGTGCAAGGTTATGAGAGACCCCAATGGGATAAGTAGAGGATCAGGGTTTGTGGCATTCTCAACTCCTGAAGAGGCATCTAGAGCACTCTTGGAGATGAATGGAAAAATGGTGGTAAGCAAGCCACTATATGTTGCTCTAGCCCAACGTAAAGAAGATAGGAGAGCTAGACTGCAGGCTCAATTTTCTCAAATGCGGCCTGTTGCAATGGCTCCTTCTGTAGCTCCCCGTGTGCCAATGTACCCCCCTGGTGGTCCAGGTATGGGACAACAAATATTTTATGGTCAAGCCCCTCCTGGAATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTTGTACCTGGTATGAGGCCTGGAGGGGCCCCTATGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGCCAGCGGCCAGGTGGAAGACGTGCAGGTGCAGTTCAGCAGAGCCAGCAGTCAGTTCCACTAATGCAGCAGCAGATGCTTCCAAGGGGGCGGGTCTATCGATATCCTCCTGGTAGAGGTCTGCCTGATGTTCCCATGCCGGGGGTTGCTGGAGGCATGTTTTCTGTCCCATATGATGTGGGTGGAATGCCAATGCGTGATGCAGCTGTGTCCCAGCAAATTCCTATTGGGGCTTTGGCTTCTGCCCTGGCTAATGCTCCTCCAGAGCAGCAGAGGACGATGCTGGGTGAAAATCTTTACCCTCTTGTGGAACAGTTGGAGCCTGAGAATGCGGCTAAGGTGACAGGCATGCTTCTGGAGATGGATCAGACTGAGGTTTTGCACTTGCTTGAGTCACCAGAAGCTCTGAAAGCCAAGGTGTCTGAGGCAATGGATGTTCTGAGGAATGTTGCTCAGCAGCAGCAGGCAGGCAGTGCTGTCGACCAACTGGCGTCATTATCTCTTAATGACAATCTTGTTTCTTAG 1947 0.4617 MAQVQVQPQNAIPGANGAPATGGGNQFLTISLYVGDLDVNVTDSQLYDLFSQAGQVVSVRVCRDLTSRRSLGYGYVNYNSAQEAARALDALNFTPLNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESVIDKTKFNNVFVKNLSESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAEDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKVRFEQSMKEAADKYQGANLYVKNLDDSISDDKLRELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVAPRVPMYPPGGPGMGQQIFYGQAPPGIIPSQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQRPGGRRAGAVQQSQQSVPLMQQQMLPRGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDVGGMPMRDAAVSQQIPIGALASALANAPPEQQRTMLGENLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVSEAMDVLRNVAQQQQAGSAVDQLASLSLNDNLVS 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0384 648 Pfam Poly-adenylate binding protein, unique domain 557 621 IPR002004 GO:0003723
Glsi01g0384 648 FunFam Polyadenylate-binding protein 116 199 - -
Glsi01g0384 648 SUPERFAMILY RNA-binding domain, RBD 209 392 IPR035979 GO:0003676
Glsi01g0384 648 CDD RRM1_I_PABPs 31 110 IPR034364 -
Glsi01g0384 648 Gene3D - 545 628 - -
Glsi01g0384 648 SMART poly_2 561 624 IPR002004 GO:0003723
Glsi01g0384 648 Gene3D - 28 118 IPR012677 -
Glsi01g0384 648 SMART rrm1_1 210 282 IPR000504 GO:0003723
Glsi01g0384 648 SMART rrm1_1 313 385 IPR000504 GO:0003723
Glsi01g0384 648 SMART rrm1_1 119 191 IPR000504 GO:0003723
Glsi01g0384 648 SMART rrm1_1 31 104 IPR000504 GO:0003723
Glsi01g0384 648 SUPERFAMILY PABC (PABP) domain 491 642 IPR036053 GO:0003723
Glsi01g0384 648 Gene3D - 194 294 IPR012677 -
Glsi01g0384 648 SMART rrm2_1 313 385 IPR003954 GO:0003676
Glsi01g0384 648 SMART rrm2_1 210 282 IPR003954 GO:0003676
Glsi01g0384 648 SMART rrm2_1 119 191 IPR003954 GO:0003676
Glsi01g0384 648 SMART rrm2_1 31 104 IPR003954 GO:0003676
Glsi01g0384 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Glsi01g0384 648 Gene3D - 295 396 IPR012677 -
Glsi01g0384 648 Gene3D - 119 191 IPR012677 -
Glsi01g0384 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Glsi01g0384 648 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 622 IPR006515 GO:0003723
Glsi01g0384 648 FunFam Polyadenylate-binding protein 545 627 - -
Glsi01g0384 648 CDD RRM4_I_PABPs 311 389 - -
Glsi01g0384 648 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 549 626 IPR002004 GO:0003723
Glsi01g0384 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723
Glsi01g0384 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Glsi01g0384 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Glsi01g0384 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Glsi01g0384 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Glsi01g0384 648 CDD RRM2_I_PABPs 116 192 IPR045305 -
Glsi01g0384 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Glsi01g0384 648 FunFam Polyadenylate-binding protein 16 115 - -
Glsi01g0384 648 FunFam Polyadenylate-binding protein 200 294 - -
Glsi01g0384 648 FunFam Polyadenylate-binding protein 295 400 - -
Glsi01g0384 648 PANTHER RNA BINDING PROTEIN 26 92 - -
Glsi01g0384 648 CDD RRM3_I_PABPs 208 287 - -
Glsi01g0384 648 SUPERFAMILY RNA-binding domain, RBD 31 199 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0384 Glsi-ChrGlsi01 3171082 3175147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0384 1 643 Eukaryotic Initiation Factors Gene Family AT4G34110 72.588 0.0 923