Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0376 ATGCAAGGTCACAGAAGTACTATAGGGTCCTTTACATCAATTGTTAGTTTGATGCAGGAGCCTAGTTCTAGTGGCACTGATATGAATCAGCAGACTTCCTTGAACCACATGCAAAATGCAGTAGATACCCGGTTGTCAGATTATTTGGGATCTTCTGGCGAGGCTGCATGTTTATGTGCCACTGGTTCTAATGTTCAGAGTTATGGTGGATGGAATACTGGTGAACCTAGTTCCGGCCTGAATCTCCACAACCAAGTCAATGATGGGCTAAAAGCAGAACATGGCCAGTCTTCTTCATGTGGTGCTCCTGCTGAGGATGGTCTCACACCAGAAGAAAGGCAATTTGAACCAAATAATGTAACTTTTCCTGTTACTTCAAATAGTAATTTACATGGGAATCAATCCAGAATTCAGCCTTTCTTTTTTCAAGGTTCCAGCTCCAATCGTACAACCCAGAATGTGACTCTAAATATGGGTCACATTGTGAATTCTGCTAATCGTGGGAAGGGAACCGAAGCTTGTAGCAGTGATAATAACCTCAATGCTTGTGGATTAGATAGAGAGCAGGCATCATTTGGCAGTGCTTCATGTGATCATGTAGGATCTTCATCCAGAAACTCTGGTTACATGGCTGGGGGAGATAATGGTAGTTCAAGTTCTTCTTTAGTAAATTGGGGTTCTTCCTGCAAGAGAAAGGCCTTTGAAAGTAGTTCTGGCCAGCTGTGTACTGGGGCAAGCTCAAGCTATTTTCTAGATGCTGAAAACAGTTGCTGGACCTGTCCTACTGGGGCTGCCAACCTTAATGCTTCCAGCAGTTTAAATGTTTCTAGATCATCTGAGGATATTCCTATTACTAATCCTCCTGTACAGCAAAACCCAAGAAATGAGGAGAGGCAAATAACTTCTGATTCATTCCCTTTGATAGGTGTCATGGGAAATGTGGACAGGCCTCTCAGAAGTTTTGATAGGAGGATGAATTATGTGCAGCATCAGGAATCTTGGCATTTTAATCAATCTTCCTCCCGACAAATACCTAGCTCTCACCCATTTAATGATTCTCTGGAATTGAGGTTAACAGCTGGAGTAACAGCAGCCAATTCTAGTGCTCCTCAGAGCCAGTCACATGCCATGCGCATCCCTGGTTTGCCAACAAACACACATCCTTTTCCTTGGAGTGAAACTGCTAGTTCAAGAGGGGCTAGTTCATCTACTTCTTATAACTCTCCAGAGAGAGATGTTCAGGAAGAATTAAACTTAAGAATTTTCCCAAGAGACAATACCGAGCACCCCATGCTTGTGCCTGCATCTTCAGGACATGACCCTTCAAATTGGCATATGTCATCAGGTAATGTGAACAACTCTGGAGGCTTACCTCCTCCATCTTGGATTGCATCCAGTTTAAGTGTCCACTCATTGCCTAATCCCAGCTGGACTGTTCACCATGAAGTCCCAACACAGAACCAGCTAAGATTATCAGAGTTCAGTCCCTGGTCCTCTTTTCCATCAATGAGCTCAGTATCTGGTGTTCATAATGGTCATTCTGCCTCATCTTCTTCTGGTACTCCTTCCTCTACTCAGGATACGAGCAACCGTCAATCACATCCAAGATCAGCATCATTGATGGCGAGAAGAGGTGATGATCTTAGTGCTCCCCATTCATTACGGACTTTAGCTGTTGACATTGAGGGGAGACGGCGACTCATATCTGAGATTCGTCAAGTCTTAAATGCAATGCGTAGGGGAGAGAACTTACGAGCTGAGGATTATTTGCTCTTTGACCCTTTCCTATATCATGGCATGGCTGAAATGCATGACAGGCACAGAGACATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGCTGGCATTGGAGGAGCGCATAGGGAACGTGAACACTGGATTGAGCGCAGATATCATTATGAAGTTGATGAAACAGCGAATCTTTGTGTCTGTCATGACCGAGTCTTCTACAGATTTGGAACCTTGCTGTATCTGTCAGGAACAATATGCTGATGGAGATGATGTAGGTTCACTGGATTGTGGACATGAATTCCACATCAACTGCATCAAGCAGTGGCTAATGCAGAAGAACCTATGCCCCATTTGCAAAACAACAGCCTTAGCTACATGA 2136 0.4396 MQGHRSTIGSFTSIVSLMQEPSSSGTDMNQQTSLNHMQNAVDTRLSDYLGSSGEAACLCATGSNVQSYGGWNTGEPSSGLNLHNQVNDGLKAEHGQSSSCGAPAEDGLTPEERQFEPNNVTFPVTSNSNLHGNQSRIQPFFFQGSSSNRTTQNVTLNMGHIVNSANRGKGTEACSSDNNLNACGLDREQASFGSASCDHVGSSSRNSGYMAGGDNGSSSSSLVNWGSSCKRKAFESSSGQLCTGASSSYFLDAENSCWTCPTGAANLNASSSLNVSRSSEDIPITNPPVQQNPRNEERQITSDSFPLIGVMGNVDRPLRSFDRRMNYVQHQESWHFNQSSSRQIPSSHPFNDSLELRLTAGVTAANSSAPQSQSHAMRIPGLPTNTHPFPWSETASSRGASSSTSYNSPERDVQEELNLRIFPRDNTEHPMLVPASSGHDPSNWHMSSGNVNNSGGLPPPSWIASSLSVHSLPNPSWTVHHEVPTQNQLRLSEFSPWSSFPSMSSVSGVHNGHSASSSSGTPSSTQDTSNRQSHPRSASLMARRGDDLSAPHSLRTLAVDIEGRRRLISEIRQVLNAMRRGENLRAEDYLLFDPFLYHGMAEMHDRHRDMRLDVDNMSYEELLALEERIGNVNTGLSADIIMKLMKQRIFVSVMTESSTDLEPCCICQEQYADGDDVGSLDCGHEFHINCIKQWLMQKNLCPICKTTALAT 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0376 711 MobiDBLite consensus disorder prediction 364 413 - -
Glsi01g0376 711 MobiDBLite consensus disorder prediction 434 457 - -
Glsi01g0376 711 FunFam E3 ubiquitin-protein ligase MBR2 631 709 - -
Glsi01g0376 711 MobiDBLite consensus disorder prediction 440 457 - -
Glsi01g0376 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 709 IPR013083 -
Glsi01g0376 711 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 225 709 IPR045191 GO:0061630
Glsi01g0376 711 SMART ring_2 664 704 IPR001841 -
Glsi01g0376 711 MobiDBLite consensus disorder prediction 364 380 - -
Glsi01g0376 711 MobiDBLite consensus disorder prediction 505 537 - -
Glsi01g0376 711 MobiDBLite consensus disorder prediction 277 301 - -
Glsi01g0376 711 MobiDBLite consensus disorder prediction 387 412 - -
Glsi01g0376 711 SUPERFAMILY RING/U-box 645 708 - -
Glsi01g0376 711 MobiDBLite consensus disorder prediction 505 546 - -
Glsi01g0376 711 ProSiteProfiles Zinc finger RING-type profile. 664 705 IPR001841 -
Glsi01g0376 711 Pfam Ring finger domain 664 705 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0376 Glsi-ChrGlsi01 3100929 3104747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0376 1 711 C3H Transcription Factor Family AT2G15530 37.567 1.57e-113 356