Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0375 ATGACTTTCCATCTATTGGAGCTAGTCATGTCTGAAGAAGAAGAAGAAAACCAGTCGTGGGGTGTCTCCATTTCTGATAAATCTGCTGGGGAAAGCAAAGAGAAATTAGCAGTCATGAACGTGCAGAAAGAAGAGAGAAAGCGAAGCCGAGGGAAGAGGAGGATTAATGGTGGGGAAGGGATGAAGGATGGAAAAGGTGGTGAATCTGATCATGAAATACACATATGGACAGAGAGAGAAAGGAGGAGGAAGATGAGAAACATGTTCTCCACTCTTCATGCTCTGCTTCCTCACCTTCCTTCTAAGGTTGACAAGTCAACTATTGTGGATGAAGCAGTGAGCTACATCAAAACCCTAGAGCAAACTCTGGAAAAGCTACAAAAAGAAAAGGTAGAAAGACTCCAATCTGTGTCCACTTTTGGGAATGAACCATCAAGGGAGGCCATCATGGCTGATCAGAGATCTTGCAGCTGCACCACCACCATGGCCACTTCAAATCCTTCGATTTCACAATACCAAGTGGGATTTCAAACGTGGGCTTCTTCAAATGTCGTGTTGAACATTTGTGGGGACGAAGCTCAGTTCAGTGTTTGCTCTCCCAAGAAGCAATGCCTCTTCACCGCCATCTGCTTTGTGCTTCAGAAGCACGAGTTAGAGGTTTTGTCTGCTCATATTTCGTCTCGCAGTAATCGAAGCTTATATATGATTCAAGCACAGGCAAATAGAGATTCGAATCAGTTTCCAGAGGCATTTTCAGTGGAAGAAAAATTTAGACAAGCAGCTGGAGAAATTATGCTATGGCTCTCTTAA 810 0.4383 MTFHLLELVMSEEEEENQSWGVSISDKSAGESKEKLAVMNVQKEERKRSRGKRRINGGEGMKDGKGGESDHEIHIWTERERRRKMRNMFSTLHALLPHLPSKVDKSTIVDEAVSYIKTLEQTLEKLQKEKVERLQSVSTFGNEPSREAIMADQRSCSCTTTMATSNPSISQYQVGFQTWASSNVVLNICGDEAQFSVCSPKKQCLFTAICFVLQKHELEVLSAHISSRSNRSLYMIQAQANRDSNQFPEAFSVEEKFRQAAGEIMLWLS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0375 269 CDD bHLH_AtbHLH_like 74 127 IPR045239 -
Glsi01g0375 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 119 IPR011598 GO:0046983
Glsi01g0375 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 131 IPR036638 GO:0046983
Glsi01g0375 269 SMART finulus 77 125 IPR011598 GO:0046983
Glsi01g0375 269 MobiDBLite consensus disorder prediction 11 69 - -
Glsi01g0375 269 Gene3D - 68 140 IPR036638 GO:0046983
Glsi01g0375 269 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 14 268 IPR044278 GO:0003700|GO:0006355|GO:0009960
Glsi01g0375 269 Pfam Helix-loop-helix DNA-binding domain 77 120 IPR011598 GO:0046983
Glsi01g0375 269 Coils Coil 109 136 - -
Glsi01g0375 269 MobiDBLite consensus disorder prediction 28 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0375 Glsi-ChrGlsi01 3092616 3100846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0375 15 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 39.535 3.53e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi01g0375 HLH 6.2e-10 No_clan