Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0374 ATGCAGGAGGTGGACCCAGCAAACCTCATTGGGGTTGCTTCTCTGGGGTCACCTTCATCAGCTTTAGATTCCAGAGAGCAGAGGGCATCAAGGCAAGGCCTGAGATGTCACACCCTTTTGTGGGAGAAAGCGACAAAAAAAGGTCACAGGCTCGAGAATTGGCTCCATTTGAAGGCTCTCTGTGGGGCCTATGCGTGTTGTGCTGTGCGAGGTAGCAGCAGCCCACGGAAACGTGAGATGGAGACTCTGAACTGGATCATAGCCTCCAGATTTGGAGGTTTAGAGAGACAAACATCTTTGAGAGAGAAAATGCTTGGTAGTTTAGAGCCGTTGGATTTGGGAGTTCATATTCCTTACCATTTCAGCTGCCCCATCTCCCTCGAGTTGATGCGCGACCCGGTTACCATATCCACGGGTCAGACGTATGACCGACCTAGCATCGAGTCATGGATCGCCACCGGCAACACCACATGTCCCGTCACGCGGTCACCGCTTTCTGATTTCATGCTCATCCCCAACCACAATCTCCGCCGCCTCATCCAAGATTGGTGCGTCGCGAATCGGGCTTTCGGAATTGAGCGGATTCCGACTCCCAAACAACCCGCTGACCCACGGATGGTTCGGACCTTGTTGAACCAGGCCTCGTCGGAGTCGGGTTCAGCTCAGTCTCGCCTCTCCGCTTTGCGTCGTCTCAGAGGGCTCGCTCGTGACTCGGACAAGAATCGTTCTCTCATTGGCTCTTACAAGGTTCGCGAGATTCTACTCCGTATCATCTTCCTTGATTCTTCTGATTCTTCCGAGTTGAAGCATGAGTCACTCGCGCTTCTGGTGATGTTCCCACTCGCCGAGCCGGAATGCGCGTCAATCGCTTCTGATCCGGATAGAATCAACTATTTATCGCGTCTTCTGTTTCATCCTTCCACGGACGTCCGAGTCAACTCAGCGGCATTAATCGAAATCGTCGCTGTAGGGACTCATTCGCCGGAGGTCCGAGCTCAGATCAGCAATGTTGACGAAATCTACGAAGGAGTGGTCGACATTCTGAAGTGTCCGATTTCGTACCCTCGCGCTCTCAAAGTCGGGATAAAGGCTTTATTCGCTTTATGCCTGGTGAAACAAACCCGACACAAAGCCATCGTTGCCGGTGCACCGGAGGTTCTCATCGACCGGTTAGCCGATTTCGAGAAATGCGACGCAGAGAGAGCTTTAGCTACGATTGAACTGCTCTGTCGAATTCCGGCGGGGTCTGCCGCATTTGCAGGGCACGCGCTGACGGTGCCATTGTTGGTGAAGATAATACTGAAGATATCGGACCGGGCGACGGAGTATGCCGCCGGAACTCTGCTGTCTCTGTGCTCGGAATCGGAGCAGAGACAGAGAGACGCCGTGGCGGCTGGGGTGTTGACCCAGCTGCTATGGCTGGTACAGAGTGACTGTACGGAGAGAGCAAAGAGGAAGGCGCAGCTTTTGCTGAAGCTTCTTCGGGATGCGTGGCCACAAGATTGCGTCGGAAATTCTGACGATTTTGCATGCAGCGTAGTGGTAGTACCGTTCTGA 1557 0.5356 MQEVDPANLIGVASLGSPSSALDSREQRASRQGLRCHTLLWEKATKKGHRLENWLHLKALCGAYACCAVRGSSSPRKREMETLNWIIASRFGGLERQTSLREKMLGSLEPLDLGVHIPYHFSCPISLELMRDPVTISTGQTYDRPSIESWIATGNTTCPVTRSPLSDFMLIPNHNLRRLIQDWCVANRAFGIERIPTPKQPADPRMVRTLLNQASSESGSAQSRLSALRRLRGLARDSDKNRSLIGSYKVREILLRIIFLDSSDSSELKHESLALLVMFPLAEPECASIASDPDRINYLSRLLFHPSTDVRVNSAALIEIVAVGTHSPEVRAQISNVDEIYEGVVDILKCPISYPRALKVGIKALFALCLVKQTRHKAIVAGAPEVLIDRLADFEKCDAERALATIELLCRIPAGSAAFAGHALTVPLLVKIILKISDRATEYAAGTLLSLCSESEQRQRDAVAAGVLTQLLWLVQSDCTERAKRKAQLLLKLLRDAWPQDCVGNSDDFACSVVVVPF 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0374 518 Pfam U-box domain 117 188 IPR003613 GO:0004842|GO:0016567
Glsi01g0374 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 190 IPR013083 -
Glsi01g0374 518 SMART Ubox_2 120 183 IPR003613 GO:0004842|GO:0016567
Glsi01g0374 518 SUPERFAMILY RING/U-box 115 193 - -
Glsi01g0374 518 Gene3D - 193 508 IPR011989 -
Glsi01g0374 518 ProSiteProfiles U-box domain profile. 116 190 IPR003613 GO:0004842|GO:0016567
Glsi01g0374 518 FunFam U-box domain-containing protein 31 116 190 - -
Glsi01g0374 518 PANTHER WDSAM1 PROTEIN 116 503 IPR045185 GO:0061630
Glsi01g0374 518 CDD RING-Ubox_PUB 118 170 IPR045210 -
Glsi01g0374 518 SUPERFAMILY ARM repeat 206 494 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0374 Glsi-ChrGlsi01 3073146 3085772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0374 104 518 U-box Gene Family AT3G19380 66.351 0.0 540