Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0373 ATGCTCGTCGGGGTTGCTTCCTTCTTTGGATTGTTGGCATTTCTTGGAATGCAGCTTCCTGTAATAATGGCCGATTGCCCTTTGGATTTAAATGGTTCAAATTTTACGCTGGCATCCTCTATCTGCTCCAACCAAGGTGACAGAAACAAATGTTGCCGCTACATTAACGCGAATATTGCAGTTTCTGTTGCTCGATTTGCAAATGTGACAAGCAATCTAGGGGTTGCTCCAAATGCTTCTGACATCTGCCTCCAGACCATATCTGAGACTTTGCAACTTTATGGAGTTCCACAAAATGCAGATGTTTTCTGTGGTTTTGGGACAAAAATCCCGGTGAATTATGAGTGTAAGGGTCGAACTACTGTCACACAGATGCTGCAATCTCCCAGATTTGGGGAGGTCACCAAAAATTGTAAGGTGCCTCTTGTAGAGGAAAGTAAATGCAAGAAATGCGTAAATGCTAGCATTGGTTACCTCCATAATGTAATAGGTATTGAAGATAATATCACATTGAGTAGGTGCCGTGATGCCACTTTTGCTGCACTGGCAAGCCAGGTTGATGAAATATCTACCATTGAAATTGCGAGCTGTTTCTTTGGGGTTCAAGGTCTTCTTGTGCCTACTGCTTCAGAGCCAACCCCTTTGCCAACTCCTGAGGCTTCTCCAAGTCAACCGGTTGCTGATAGCCCAAGTCAATTAGTGTTAGGTGTACCCCTTAGAAGAAATCACCATTCATACCACCTGACATTAATTCCAGGTATTGGCATTGCCGTCACAGCTGTTGCGGTTATGATGCTCATAGTCTTGATAGTTTTAATTCGTCAGAAAAGCAGAGAGATAGAGAGGCCTGATAATTTAGGTAAAAGCTCTGTGAAATCCTTACCTCCTTGTGCAACATGGAGATTTCAGGAAGGTCCTTCATCTACATTCCGAAAATTCAACTACAGGGAGATAAAGAAGGCAACGGAAAATTTCAGCACTATGATTGGGCAAGGGGGGTTTGGAACAGTGTATAAAGCTCGTTTTAGTGATGGTTTTCTGGCAGCAGTAAAGAGGATGGACAAAGCATCAGAGCAGGGGGAGGATGAGTTTTGCAGAGAAATAGGGCTTCTTGCTCGGCTGCATCACCGGCATCTTGTTGCTTTAAAAGGTTTTTGCATTAAAAAACATGACAGGTTTCTGATGTACGAGTACATGGAAAATGGAAGCTTGAAAGATCATCTTCATTCCCCTGGTAAAACACCTCTGAGTTGGCGAACTAGAATCCAAATTGCCATCGATGTGGCTAATGCACTGGAGTACCTTCATTTCTATTGTGATCCTCCTCTATGCCACAGAGACATTAAGTCTAGCAACATTTTACTGGATGAAAAATTTGTTGCAAAGTTAGCTGATTTTGGCCTTGCACATGCATCAAAATATGGTTCCATATGCTTCGAACCAGTAAATACTGATATCCGGGGAACTCCGGGTTATATGGATCCTGAATATATGGTTACCCAAGAACTCACCGAAAAAAGCGATATTTACAGTTTTGGTGTGCTATTATTGGAAATTGTGACTGGAAGACGAGCCATTCAAGATAATAAGAATTTGGTAGAATGGGCACAGCCTTACATGGAATCAGAATTAAGATTGATGGAGTTAATAGATCCCAATGTCAGAGAATCGTTTGATTTGGATCAGCTCCAAACAGTCGTCTCTGTAGTGGGATGGTGCACCCAGAGAGAAGGCAGGGCAAGACCTTCAATAAAACAGGTCCTTAGGCTTCTCTATGAGACTTCAGAACCAATGCACAGTGGGTTTCTACAAGCTATTGAAGATGAAGAATATAAAGAAGATCTGCAGACGGGCAGAAGAAGCAAGGGAAAAGTACACAGAAATGAACACAGTGGAGATGGAAGATATCTGGCTTCTTCTTCAAGTACATCTCGGTCATATTGCAGTAGAAGCTTTTTACTCGAGACAGGCTCCCCACAGTCCCCACCGAATATTTTTTCAGTCTGA 2007 0.426 MLVGVASFFGLLAFLGMQLPVIMADCPLDLNGSNFTLASSICSNQGDRNKCCRYINANIAVSVARFANVTSNLGVAPNASDICLQTISETLQLYGVPQNADVFCGFGTKIPVNYECKGRTTVTQMLQSPRFGEVTKNCKVPLVEESKCKKCVNASIGYLHNVIGIEDNITLSRCRDATFAALASQVDEISTIEIASCFFGVQGLLVPTASEPTPLPTPEASPSQPVADSPSQLVLGVPLRRNHHSYHLTLIPGIGIAVTAVAVMMLIVLIVLIRQKSREIERPDNLGKSSVKSLPPCATWRFQEGPSSTFRKFNYREIKKATENFSTMIGQGGFGTVYKARFSDGFLAAVKRMDKASEQGEDEFCREIGLLARLHHRHLVALKGFCIKKHDRFLMYEYMENGSLKDHLHSPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNILLDEKFVAKLADFGLAHASKYGSICFEPVNTDIRGTPGYMDPEYMVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLVEWAQPYMESELRLMELIDPNVRESFDLDQLQTVVSVVGWCTQREGRARPSIKQVLRLLYETSEPMHSGFLQAIEDEEYKEDLQTGRRSKGKVHRNEHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNIFSV 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0373 668 ProSiteProfiles Protein kinase domain profile. 323 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0373 668 FunFam Putative receptor-like protein kinase 399 599 - -
Glsi01g0373 668 FunFam Putative receptor-like protein kinase 292 398 - -
Glsi01g0373 668 SUPERFAMILY Protein kinase-like (PK-like) 304 594 IPR011009 -
Glsi01g0373 668 MobiDBLite consensus disorder prediction 617 633 - -
Glsi01g0373 668 SMART serkin_6 323 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0373 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Glsi01g0373 668 Gene3D Phosphorylase Kinase; domain 1 298 398 - -
Glsi01g0373 668 CDD STKc_IRAK 329 591 - -
Glsi01g0373 668 PANTHER OS01G0750732 PROTEIN 153 616 - -
Glsi01g0373 668 Pfam Protein kinase domain 327 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0373 668 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Glsi01g0373 668 MobiDBLite consensus disorder prediction 617 642 - -
Glsi01g0373 668 Gene3D Transferase(Phosphotransferase) domain 1 399 614 - -
Glsi01g0373 668 Pfam SPARK 25 159 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0373 Glsi-ChrGlsi01 3068248 3072864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0373 24 667 Receptor kinase-like Gene Family AT3G19300 60.836 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Glsi01g0373 Pkinase 6.4e-49 CL0016