Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0371 ATGGCTACCCCAGATAAATCTACATCAATAGTGTCTTCAGACTCCTTGGAACACAAAGGAAAAGATATGAATCATATGGCTGAATCAAATGGGAATTTGCCTTTAAACCAGAAACTCTGTAACTCCTTGGATGGCCCAGTGGCTATCCTTTGGGATATTGAAAATTGTCCTGTCCCAAGTGGTGTTCGTCCGGAAGATGTAGCTGGTAATATAAGAATGGCTTTGCGGGTGCATCCAATAATTAAAGGACCTGTTATGATGTTTTCTGCTTATGGGGACTTCAATGCCTTTCCCAGGCGACTCAGAGAGGGCTGCCAAAGAACTGGTGTTAAACTCATTGATGTTCCCAATGGGAGAAAGGATGCTGCTGACAAAGCTATCTTGGTTGACATGTTCTTGTTTGCCCTTGACAACCCTCCACCTTCCTCTATCATGTTGATATCTGGAGATGTTGATTTTGCTCCAGCACTTCACATTCTTGGTCAACGGGGATATACTGTCATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCATCTGCCCTTAGCAATGCCGGTAAATTTGTCTGGGACTGGCCTAGCGTTGCTCGTGGGGAAGGCTTTGTGCCCCCATCAAAGGCTCTGATGCCTCCTCGTGTGGGTCCAACTGAGGTTGCTGGATATCAAAATGAAGAAGAAGCTATAATTTATAGAGGAATCTCACAGAATTATCATAACTCCAGGGTTTCCTCTGTTGTGTCACAATCTCTGTCTGAATACAACAGTGGCACATTGAATGTGTCTTGCTTTCCAACTGCTTTGAGGTCACATAGCCTTCCATCTGGATTGAATAATGTTTCAGCAGGACCTATGTCTTCTAGTGACCAAAATGAATACCCATTGTGGGTTCAGCCTGGGGATTTAAATGGTCTCAGGGGTCAGCTGGTAAGGTTGCTTGAACTTTCTGGCGGATGCCTGCCTCTGACCCGAGTTCCAGCAGAGTATCAGAAATATTTTGGGAGGCCTCTTTATGTATCTGAATATGGGGCATTCAAACTAGTAAACCTTTTCAAGAAGATGGGCGATCCTTTGGCTGTAGAAGGGAAAGGGCATAAAAAATTTGTATATATCCGAAACTGGAAAGCAGGCCCAAGTGCACCCCCTTTGAATCAAGCAAAAAAAGATAAGAAAGGAAAAGGGGTTCTAGAAGAGAATGTGGATGTTGTCACTGCTGGTTGCTCTTCAGATGAGTTCTCAGATGAAGAAAGAGTAGTCACAGAAGAACATGACGAGAGAATTAGCACAGGAAAGGGCCACCAAGGGAGAGTGGCTAGATGTGAAATTGATGACTATATTCTTGATCAGTTCAAGCACGAACTGCAAGAGATTCTAGTAAGTTATTCTTGTCGAATATTCTTAGGTTGTTTTGAGGCCATTTACCAGCAACGGTATAAGAGACCTCTGGAATACCAGAGATTTGGTGTGGACAAGTTAGAGGATTTATTGGAGAAAGTGAGTGATGTGGTAGTATTGCACGAAGAACCAGTAAGCAAGAGGATGTTCCTGGCTGCTGTGGGTGGTTAG 1560 0.4404 MATPDKSTSIVSSDSLEHKGKDMNHMAESNGNLPLNQKLCNSLDGPVAILWDIENCPVPSGVRPEDVAGNIRMALRVHPIIKGPVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALSNAGKFVWDWPSVARGEGFVPPSKALMPPRVGPTEVAGYQNEEEAIIYRGISQNYHNSRVSSVVSQSLSEYNSGTLNVSCFPTALRSHSLPSGLNNVSAGPMSSSDQNEYPLWVQPGDLNGLRGQLVRLLELSGGCLPLTRVPAEYQKYFGRPLYVSEYGAFKLVNLFKKMGDPLAVEGKGHKKFVYIRNWKAGPSAPPLNQAKKDKKGKGVLEENVDVVTAGCSSDEFSDEERVVTEEHDERISTGKGHQGRVARCEIDDYILDQFKHELQEILVSYSCRIFLGCFEAIYQQRYKRPLEYQRFGVDKLEDLLEKVSDVVVLHEEPVSKRMFLAAVGG 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0371 519 CDD PIN_limkain_b1_N_like 46 172 - -
Glsi01g0371 519 Gene3D - 44 192 - -
Glsi01g0371 519 ProSiteProfiles OST-type HTH domain profile. 299 371 IPR025605 -
Glsi01g0371 519 Gene3D - 441 517 IPR041966 -
Glsi01g0371 519 Gene3D - 299 368 IPR041966 -
Glsi01g0371 519 Pfam OST-HTH/LOTUS domain 303 367 IPR025605 -
Glsi01g0371 519 Pfam OST-HTH/LOTUS domain 445 507 IPR025605 -
Glsi01g0371 519 ProSiteProfiles OST-type HTH domain profile. 444 518 IPR025605 -
Glsi01g0371 519 PANTHER LIMKAIN B LKAP 26 480 IPR024768 GO:0005777|GO:0010468
Glsi01g0371 519 CDD LOTUS 445 507 - -
Glsi01g0371 519 MobiDBLite consensus disorder prediction 1 28 - -
Glsi01g0371 519 Pfam NYN domain 46 185 IPR021139 GO:0004540
Glsi01g0371 519 CDD LOTUS 300 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0371 Glsi-ChrGlsi01 3065047 3066606 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0371 43 197 C2H2 Transcription Factor Family AT5G61190 43.226 4.92e-30 123