Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0358 ATGTCCTCCAAGAGAACCAGACCCGCCGAAGCTCAGCCCTCCCCCTCCTTCTCCCCGCCGCAAACCTCCCTCCACTTCGACGACCACGAGCTCTCCCTCATGGTCTCCGCCCTGGCCAAAGTCGTCGCCGGTTCCACCACCGTCTCAACCACCGCCTCTGACCTTCCCCTTACGCAGGAAATTAGCCTACCGCAGACCTCACAGTACTGCGATGCAGTAGCCACCGCCACGAGCTTCGACTGCACAGCGCCGGCGACGAACATCGAGACTTGCGGCGAATGCAAGATCAAAGGATGCCTGGGGTGCAATTTTTTCCCAGAGGAAAAGAAGAAGAAGAAGATTAATGGCGGGAACAAGCGAACGACGACGACGACGACGACAACAACGACGAAGAAGAAATACAGGGGCGTGAGACAGAGGCCTTGGGGGAAATGGGCTGCGGAGATCCGAGACCCGAGAAGGGCGACCCGGGTTTGGTTGGGGACGTTCAATACGGCTGAGGAAGCAGCACGTGCATACGACAAAGCAGCTACAGAGTTCCGTGGGCCCCGAGCCAAGCTCAATTTTGCTTTCCCCGATAAGTCTCTGAGTTCGAGTTCGCAAGCAGAGAAAGCAGAACACCCAGCAAAGGCGGCGGAGCAAGAAAATGGGAACTGGAATTCGAATTCCACGACGGAAATGGAAACGACGGGAAATGAATTCTGGGATGCAATTGGGGATGCGGATTTTCAACAGCTGATGATGATGATGACGGATTTTACAGGGGATTCTTCAGACTCTGCTACGACAAATAGTCATAGTACTCATAGTTGGTGA 816 0.5478 MSSKRTRPAEAQPSPSFSPPQTSLHFDDHELSLMVSALAKVVAGSTTVSTTASDLPLTQEISLPQTSQYCDAVATATSFDCTAPATNIETCGECKIKGCLGCNFFPEEKKKKKINGGNKRTTTTTTTTTTKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTAEEAARAYDKAATEFRGPRAKLNFAFPDKSLSSSSQAEKAEHPAKAAEQENGNWNSNSTTEMETTGNEFWDAIGDADFQQLMMMMTDFTGDSSDSATTNSHSTHSW 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0358 271 MobiDBLite consensus disorder prediction 118 132 - -
Glsi01g0358 271 MobiDBLite consensus disorder prediction 192 227 - -
Glsi01g0358 271 Pfam AP2 domain 133 182 IPR001471 GO:0003700|GO:0006355
Glsi01g0358 271 ProSiteProfiles AP2/ERF domain profile. 133 190 IPR001471 GO:0003700|GO:0006355
Glsi01g0358 271 Gene3D AP2/ERF domain 132 191 IPR036955 GO:0003700|GO:0006355
Glsi01g0358 271 FunFam Ethylene-responsive transcription factor 2 132 191 - -
Glsi01g0358 271 CDD AP2 134 190 IPR001471 GO:0003700|GO:0006355
Glsi01g0358 271 SMART rav1_2 133 196 IPR001471 GO:0003700|GO:0006355
Glsi01g0358 271 MobiDBLite consensus disorder prediction 1 24 - -
Glsi01g0358 271 MobiDBLite consensus disorder prediction 113 137 - -
Glsi01g0358 271 SUPERFAMILY DNA-binding domain 133 190 IPR016177 GO:0003677
Glsi01g0358 271 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Glsi01g0358 271 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Glsi01g0358 271 PANTHER DNA-BINDING DOMAIN 111 226 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0358 Glsi-ChrGlsi01 2923138 2923953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0358 28 200 AP2-EREBP Transcription Factor Family AT4G34410 41.709 1.37e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi01g0358 AP2 1.9e-15 CL0081