Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0347 ATGGACGACTATTTGAGTAGCGACGACGATTACCCTTACTCCGATCAGGCGTCCGCCGACGGCTTTGAAAACGACGAGCCCGATATTCATTTGGTTACTCCCAAGGGTCCCACAACTCTGGTGATTACAAAGGAATCACTTCTAGCTGCACAGAAAGAGGATTTGCGCAGAGTAATGGAAATGCTATCATTGAGAGAGCACCATGCAAGAACCCTACTTATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGACAAGGGAAAAGCTTTGTTGTTTGCTGAAGCTGGTGTTAGTGTGGATGAACATCGTGATCCTGATTCATCAGTTCCTTCTTCAGTAATGTGTGATATCTGCATAGAGGATGTTCCTAGTAATGAAGCCACAAGAATGGATTGTGGTCACTGTTTTTGCAACAACTGTTGGACAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAACGAATTAGGTGCATGGCACACAAGTGTAATGCTATTTGTGATGAAGCTGTTGTAAGAACTCTAGTCAGTAAAAAGCACCCTGACATGGCAGAGAAATTTGAGCGTTTTCTTCTTGAATCCTACATTGAAGACAATAAAAGAGTTAAATGGTGCCCCAGCACTCCTCATTGTGGGAATGCAATACGTGTTGAGGATGATGAATTATGTGAGGTAGAATGTTCATGTGGTTTACAATTTTGTTTTAGTTGCTTGTCAGAAACACACTCCCCCTGTTCATGTTTGATGTGGGAGCTCTGGGCTAAGAAGTGTCGAGATGAATCAGAAACAGTTAATTGGATAGCAGTTCATACAAAACCTTGTCCAAAATGCCACAAACCGGTGGAGAAGAATGGTGGTTGCAACTTGGTTAGCTGTATCTGTGGTCAAGCATTTTGTTGGCTGTGTGGTGGGGCCACTGGACGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAACAAATTGAAAAAATGGCTGAACGTGCGAAGCGAGATCTATACCGGTATATGCATTATCATAATCGCTATAAGGCTCACACGGATTCCTTTAAGCTTGAAAGTAAATTGAAAGAGACTATACAAGGGAAGGTTGCTATTTCTGAAGAGAGGGATTCTATGCTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTATCGTATTCATACCCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGATGAAATGACTGAAGAGCAAAGGGAAATAAAACAGCATTTATTTGAGGATCAGCAGCAGCAGCTTGAGGGAAATGTTGAAAAGCTGTCCAAAATTCTGGAGGAACCTTTTGACCAGTTTCCAGATGATAAGGTTATGGAGATAAGGATACAAGTAATCAATCTGTCAGCAGTTATTGACAATCTGTGTCAAAAAATGTATGAGTGCATTGAGAATGATTTATTGGATCCTCTCCAACTGGGTCCAGTTCACAGGATTGCTCCATACAAGTCAAAGGGCATAGAGAGGGCATCAGAACTTTTAGCTTGTTGGAGCAATAAAGCCAATAATACTGGTGGAACAGCAGCACTTGATCGGCCTTCTGGGTCTGGGAGTTCAGATGAGAGTGGATGCTCTTCTCGGAAGCGTGCTAGGAAAGAAGTTGTTGGTGGTGGCCTTTTCGATCTAAACTTGCCAGCAGAGATTTTAGACAGAAATTGA 1740 0.4201 MDDYLSSDDDYPYSDQASADGFENDEPDIHLVTPKGPTTLVITKESLLAAQKEDLRRVMEMLSLREHHARTLLIYHRWDVEKLFAVYVDKGKALLFAEAGVSVDEHRDPDSSVPSSVMCDICIEDVPSNEATRMDCGHCFCNNCWTEHFIVKINEGQSKRIRCMAHKCNAICDEAVVRTLVSKKHPDMAEKFERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFSCLSETHSPCSCLMWELWAKKCRDESETVNWIAVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKQIEKMAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQGKVAISEERDSMLRDYSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEEQREIKQHLFEDQQQQLEGNVEKLSKILEEPFDQFPDDKVMEIRIQVINLSAVIDNLCQKMYECIENDLLDPLQLGPVHRIAPYKSKGIERASELLACWSNKANNTGGTAALDRPSGSGSSDESGCSSRKRARKEVVGGGLFDLNLPAEILDRN 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0347 579 MobiDBLite consensus disorder prediction 533 550 - -
Glsi01g0347 579 FunFam RBR-type E3 ubiquitin transferase 248 495 - -
Glsi01g0347 579 SUPERFAMILY RING/U-box 116 202 - -
Glsi01g0347 579 CDD BRcat_RBR_ANKIB1 197 261 - -
Glsi01g0347 579 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Glsi01g0347 579 CDD Rcat_RBR_ARI1-like 274 326 - -
Glsi01g0347 579 FunFam RBR-type E3 ubiquitin transferase 114 204 - -
Glsi01g0347 579 SMART ibrneu5 190 252 IPR002867 GO:0008270
Glsi01g0347 579 SMART ibrneu5 260 325 IPR002867 GO:0008270
Glsi01g0347 579 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Glsi01g0347 579 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 401 IPR031127 GO:0004842|GO:0016567
Glsi01g0347 579 SUPERFAMILY RING/U-box 190 258 - -
Glsi01g0347 579 CDD RING-HC_RBR_TRIAD1 117 170 - -
Glsi01g0347 579 MobiDBLite consensus disorder prediction 533 556 - -
Glsi01g0347 579 SUPERFAMILY RING/U-box 260 317 - -
Glsi01g0347 579 Pfam Ariadne domain 331 579 IPR045840 -
Glsi01g0347 579 MobiDBLite consensus disorder prediction 1 28 - -
Glsi01g0347 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 205 IPR013083 -
Glsi01g0347 579 Gene3D - 248 496 - -
Glsi01g0347 579 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0347 Glsi-ChrGlsi01 2848490 2852466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0347 59 549 ARIADNE family AT2G16090 73.333 0.0 745