Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0335 ATGATCGTCCTCATCACGATGATGATTCCTCCTTCTCAGCCACCCCTTCTTCATTTTCACCACTGGGTCCCATCTCCTTCTCCTTCTCCTTCTCTTTCTCCGGCCACCGTTGCTCCCACCCCCCATGCCGTTTCCGTCGACAAACTATCACCTCCGCCGTCGAAGTTGCCGATTGACTTCAGCCCACCTTTGATTGCAATGGTGGTCGTCGTAGCCGCAGCTTTCCTCGTCGTCACGTATTCCCGACTCATTTCCCGCCACCTCATGGATCCAATTGTCCGCCTCGCTCGTCGATGGCGCCGCCGTCGGAGACGCTCCTACCTACCCTCCTCCGCCGGCGACCTCGACTCCCTTCCTTACGATTCCCCATTCGAGGCAATCGATGGTCCCCACGTCTTCTCCCCTTATGGTCTTGACGAGTCCGTCATTAAGACCATACCCTTTTCCCTCTTCACCACCAAATCCAATGGACCTTTCGAAGAGTCTCGCCGCGATTGCGCTGTGTGCTTGTTGGAATTCGAAGACGATGACTATGTAAGGACGTTACCCGTTTGTTCTCACACTTTTCATGTTGATTGCATCGACGTTTGGCTCAGGTCTCACGCCAATTGTCCTCTTTGCCGCGCCGGAGTTTTGTGTGCAGAATCGCCGTTCACGCCGATGATGGCCGCGAGGATTCGACCGAGTTTCGATGACGACACAATTTTGCATAGAATCAGTATGGAGCCTTTGGTCGAAGCTCCCTCGTCGGTGTCTCATTCTCTGGTCTCGGAGATCACCCCCTGCATCGAAGAGCAATCCCCGAGAAGGATGAACAATGGAAACTCGGAGGATCGTTTCAACGGTCGCGACTTTTTGCTGAAGCGATCCTACTCGTTTGGATTCGAAAGGAGTTTGGCGTCGGAGAGAATGGTGATGGAACCAGCCACGGCGTCCCCGTGGCGGTACCGAAGGGGAAGCAGCAGCTTCTGGAGCAAAAGGCCATCGCCGTTTGGATCTTTGGGCAAGCCTAGAGTGTTTTCATTCAGATACTATAGAGGAATGAAGTCGCCGTTCTTCCGGCGAAGAGGATTCCTCCCTTTATCTGAGTCAAGCATGAGGTACGGCGGCGGCGGCGGAAGCTCATCGAGGCGAAGCAAGTCGATAGCGAGTCCGATGTTCCTGAGGTCATCGGCTTTGGCATCGGTGGGCGTCGCGGCTTTCTCGTCGAGCAGGCTCAGGTGCGGCGATCCCGAGGCGCTTCTTTCACCGGAGAGGTATAACCGGAGATAG 1272 0.5511 MIVLITMMIPPSQPPLLHFHHWVPSPSPSPSLSPATVAPTPHAVSVDKLSPPPSKLPIDFSPPLIAMVVVVAAAFLVVTYSRLISRHLMDPIVRLARRWRRRRRRSYLPSSAGDLDSLPYDSPFEAIDGPHVFSPYGLDESVIKTIPFSLFTTKSNGPFEESRRDCAVCLLEFEDDDYVRTLPVCSHTFHVDCIDVWLRSHANCPLCRAGVLCAESPFTPMMAARIRPSFDDDTILHRISMEPLVEAPSSVSHSLVSEITPCIEEQSPRRMNNGNSEDRFNGRDFLLKRSYSFGFERSLASERMVMEPATASPWRYRRGSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFLPLSESSMRYGGGGGSSSRRSKSIASPMFLRSSALASVGVAAFSSSRLRCGDPEALLSPERYNRR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0335 423 SMART ring_2 166 207 IPR001841 -
Glsi01g0335 423 CDD RING-H2_EL5-like 165 208 - -
Glsi01g0335 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 212 IPR013083 -
Glsi01g0335 423 FunFam RING-H2 finger protein ATL65 131 212 - -
Glsi01g0335 423 PANTHER RING-H2 FINGER PROTEIN ATL16 47 234 IPR044600 GO:0016567|GO:0016740
Glsi01g0335 423 Pfam Ring finger domain 165 208 IPR001841 -
Glsi01g0335 423 MobiDBLite consensus disorder prediction 30 49 - -
Glsi01g0335 423 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Glsi01g0335 423 SUPERFAMILY RING/U-box 159 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0335 Glsi-ChrGlsi01 2796594 2797865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0335 57 423 C3H Transcription Factor Family AT3G18930 52.882 1.23e-96 294