LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi01g0320	ATGGATAACGGAAGAAACCACCTCCGGCAATCAAGTTTGCCGGAGGGGAAACCGGCGCACTTTTTCAAGATAATACTTCCGACTACAATTTATGACAAGAAACTGGTATTCTTCAGTGTGCCCTCTTCCTTTTCTTTTCTTTTTCCCTCTTTCCTTCTGAATGTTGTTTGCTTTCTGAGAAAACAGAAAGCAGAGAATGACTTGAAGAGTAAAATGGAAGAAGTCCACTGGGTTTATGAAATTTCTTTTAGACTTCCTATGAAATTTGTACAAGATTACGGGGACGACTTATCCGCCATTGTTACCCTGTCTGATCCCAACCTTAAAAAATGGCAAATGGGGTTGGAGAAGATTGACGGTGACGTCTGGTTAGGTGAAGGTTGGGAGAGATTTGTCGAATATTACTCTATTACCAGTGAGTTCTTTCTGGTTTTCAGATACGAAGGAAGTTCAAAATTCCATGTTTTGATATTTGATATGACTGGTTCTGAAATTCAATACCCTTCTGATTATCCAAATTGTAATTTAGAATGTGAGGAACATGAAGAAGGCTCATTGGAATCGTCAGTAAAGAAACACCATGATTATCATTATAACGATGATTATCACTATACTGATGATTATACTGATGAGGATGAATCTGGTGATAGTGAAGAAGACAATGAAACTGAGGATGAAGGTTTTGTTGCCTATCATAGCTCTTTGCCATCTGAAAGCCCTTCTGCAATTGATCCAAGAGGTCGAGGTTTCACTAAATTTACTGATAAACGACCTAAAAGGGAGTATTCTTCACCTGCAAAATGTACATTTAGAAGAAAAAGAAAGAGACACGCATGTAATGTTAACGACACTGACCAAAGTGATTCGAAGAGTGAAGACACCAAGGAAGCATTGGATCATCGAAGATCCAAATACAGTGAGCGTTATAGAGGCCATGCAGGCAGAAGCAAAAGTCGAAGAAAAAGAAAGAGACGCGCATTTAGTGTTGATGACACTGACCAAAGTGATTCACAGAGTATAGAAGACATTATGGAAGCATCAAATCATCGAAGATGCAAACCTGGTGAGATTTATAGAGACATTAATGCAGGTAGAAGCAAAATTCGGAAAAAAAGAAAGAGACGGGTATTTAGTGTTGACGACAATGACCAAAGTGATTCAAAGAGTACTGAAGACATTGGGGAAGCGTCAAATTGTCGAAGATGCAAACATGGTGAGGTTTATAGAGGCAATGCAGATAGATATGGAGTTAGAGTTAAGAAAGAGGAACACTTAGAATGGATTCGTCGAACAACTTGCAAGTCAAAAAATTACAGAAAGAGATATATATCAGCTAAAGAAAGAGATAAGGCTATGCTTGCTGCTCGCCAGTTTAAATCTGAATTTCCTTCTTTCAGGGCTGTCTTGCGGCCTCACAACTTATACAACAGCTTTGTGTACGTGCCAGCCCAGTTTGCATCCAAGTATCTGGATGGTCGGTCGGAGATTATCAGACTTGAGACCTTGGATGGACGAAAGCAATGGCTAGCTCGGTGCTTTTTCAGAAAAGGGTCAGGTTGTGGAAAGAGCATAGGCAAAGGATGGGCTAGGTTTGCAATGGATAATGATTTGCAAGAAGGAGATGTCTGTGTCTTTGAACTCATTAAGAGGAAGGAGATCGTGTTGAGAGTTATAGTATTTCGTATCAATGAGCATTAA	1698	0.3963	MDNGRNHLRQSSLPEGKPAHFFKIILPTTIYDKKLVFFSVPSSFSFLFPSFLLNVVCFLRKQKAENDLKSKMEEVHWVYEISFRLPMKFVQDYGDDLSAIVTLSDPNLKKWQMGLEKIDGDVWLGEGWERFVEYYSITSEFFLVFRYEGSSKFHVLIFDMTGSEIQYPSDYPNCNLECEEHEEGSLESSVKKHHDYHYNDDYHYTDDYTDEDESGDSEEDNETEDEGFVAYHSSLPSESPSAIDPRGRGFTKFTDKRPKREYSSPAKCTFRRKRKRHACNVNDTDQSDSKSEDTKEALDHRRSKYSERYRGHAGRSKSRRKRKRRAFSVDDTDQSDSQSIEDIMEASNHRRCKPGEIYRDINAGRSKIRKKRKRRVFSVDDNDQSDSKSTEDIGEASNCRRCKHGEVYRGNADRYGVRVKKEEHLEWIRRTTCKSKNYRKRYISAKERDKAMLAARQFKSEFPSFRAVLRPHNLYNSFVYVPAQFASKYLDGRSEIIRLETLDGRKQWLARCFFRKGSGCGKSIGKGWARFAMDNDLQEGDVCVFELIKRKEIVLRVIVFRINEH	565

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi01g0320	565	MobiDBLite	consensus disorder prediction	362	395	-	-
	Glsi01g0320	565	PANTHER	B3 DOMAIN-CONTAINING	14	552	-	-
	Glsi01g0320	565	Gene3D	-	68	162	IPR015300	-
	Glsi01g0320	565	Pfam	B3 DNA binding domain	83	159	IPR003340	GO:0003677
	Glsi01g0320	565	Pfam	B3 DNA binding domain	469	561	IPR003340	GO:0003677
	Glsi01g0320	565	ProSiteProfiles	B3 DNA-binding domain profile.	68	161	IPR003340	GO:0003677
	Glsi01g0320	565	ProSiteProfiles	B3 DNA-binding domain profile.	464	563	IPR003340	GO:0003677
	Glsi01g0320	565	MobiDBLite	consensus disorder prediction	278	312	-	-
	Glsi01g0320	565	MobiDBLite	consensus disorder prediction	249	268	-	-
	Glsi01g0320	565	MobiDBLite	consensus disorder prediction	375	395	-	-
	Glsi01g0320	565	CDD	B3_DNA	83	159	IPR003340	GO:0003677
	Glsi01g0320	565	SUPERFAMILY	DNA-binding pseudobarrel domain	81	160	IPR015300	-
	Glsi01g0320	565	SUPERFAMILY	DNA-binding pseudobarrel domain	458	563	IPR015300	-
	Glsi01g0320	565	Gene3D	-	443	565	IPR015300	-
	Glsi01g0320	565	CDD	B3_DNA	463	561	IPR003340	GO:0003677
	Glsi01g0320	565	MobiDBLite	consensus disorder prediction	202	348	-	-
	Glsi01g0320	565	SMART	B3_2	465	563	IPR003340	GO:0003677
	Glsi01g0320	565	SMART	B3_2	72	161	IPR003340	GO:0003677
	Glsi01g0320	565	MobiDBLite	consensus disorder prediction	205	225	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi01g0320	Glsi-ChrGlsi01	2646666	2648915	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi01g0320	434	565	REM Transcription Factor Family	AT1G49480	43.609	1.84e-31	120

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Glsi01g0320		B3	5.4e-17	CL0405