Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0319 ATGCCGCGCCCTTGTTTCCACAAGCTTATTGTTCCATCTACGGTCCAAGCCAGGCAACTGAGGATTCCAGATAATTTTTTGAGGAAATTTGGGGGTGAGCTCTCTACAATTGCCACCCTTACAGTTCCTGATGGCAGTGTCTGGCGTGTTGGGTTAAAAAGGGCAGACAACAAATTCTGGTTTCATGATGGTTGGCAGGAATTTGTTCAACGTTACTCTATTGGGGTTGGATACTTTATGGTGTTTAGATATGAAGGGAATTCATCTTTCAATGTTCATATTTTCCACTTGGCTACTTCTGAGATAAACTATCAATTAGCCACACGGAGCAGTAATGAAGGACCTTACTTCGCCAATCAACATCATCTTTTTGACGAAATGGAAGATGAAGACTCCATTGAATTCTTGGGTTCAACGCCTTCACATCTTACTCCTGGTGCATTGCAAAACAACATTTACGCTGGATCTGCAGATCAATTGACACCTGGCAATAGTTATACTCCTCCAGCATTGCAGAATTTGCTTAATGGATCTAAACTTAATCACATAAACTGGGCAGATGGTGGAAATGCCCTTTCTGCAAAGGGTTCCAATTCACGAAACACTCAATTGACCAGAGATATAGGTGTTCAGTTTAATGCAGCTGAGTTTAAGAGGTCTACTGAAGAATTGAAATTGCTTGGCTCCAATGAGGGAACACAAAGAGTTAAAAAGACTGTGAGAAAGAAGCGGAAAACTGATCCTAATGGTCAAGAATCCTCTCCTCAGCATGAAGAGGAGGTAGAAATGCGCTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCGGAAGAAAGAGAAAGGGCAGTTAATGCATCAAAAGCATTTGAACCCCCTAATCCCTTCTGTAGGGTTGTCCTGCGACCCTCCTATTTGTATAGGGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAACATTTGAATGGGATTTCAGGATTCATTAAACTTCAGATTTCCGATGGGAGACAGTGGCCGGTTCGATGCCTTTATAGAGGGGGTAGAGCAAAGTTAAGCCAGGGGTGGTTTGAATTTTCAGTGGACAACAATCTTGGGGAAGGAGATGTATGTGTTTTTGAACTGCTTAGAATGAGGGACGTAGTGCTGCAAGTTACCATATTTCGTGTCCTCGAGGAGGATGCCCTATTGCTGACTCCTCCTTTGCATCAACAGCACAACCAAAATATCAGCCCAACTAAACTGTTGAACACTCCCTTGCAGCAAAACGTCAGTCCAAGTAAACTGATTAGAAATTAG 1311 0.4233 MPRPCFHKLIVPSTVQARQLRIPDNFLRKFGGELSTIATLTVPDGSVWRVGLKRADNKFWFHDGWQEFVQRYSIGVGYFMVFRYEGNSSFNVHIFHLATSEINYQLATRSSNEGPYFANQHHLFDEMEDEDSIEFLGSTPSHLTPGALQNNIYAGSADQLTPGNSYTPPALQNLLNGSKLNHINWADGGNALSAKGSNSRNTQLTRDIGVQFNAAEFKRSTEELKLLGSNEGTQRVKKTVRKKRKTDPNGQESSPQHEEEVEMRFRFYESASARKRTVTAEERERAVNASKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGISGFIKLQISDGRQWPVRCLYRGGRAKLSQGWFEFSVDNNLGEGDVCVFELLRMRDVVLQVTIFRVLEEDALLLTPPLHQQHNQNISPTKLLNTPLQQNVSPSKLIRN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0319 436 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Glsi01g0319 436 CDD B3_DNA 4 95 IPR003340 GO:0003677
Glsi01g0319 436 MobiDBLite consensus disorder prediction 245 261 - -
Glsi01g0319 436 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Glsi01g0319 436 CDD B3_DNA 298 393 IPR003340 GO:0003677
Glsi01g0319 436 ProSiteProfiles B3 DNA-binding domain profile. 300 395 IPR003340 GO:0003677
Glsi01g0319 436 Pfam B3 DNA binding domain 303 393 IPR003340 GO:0003677
Glsi01g0319 436 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Glsi01g0319 436 SUPERFAMILY DNA-binding pseudobarrel domain 293 393 IPR015300 -
Glsi01g0319 436 Gene3D - 1 98 IPR015300 -
Glsi01g0319 436 MobiDBLite consensus disorder prediction 228 261 - -
Glsi01g0319 436 PANTHER B3 DOMAIN-CONTAINING 3 383 - -
Glsi01g0319 436 Gene3D - 277 397 IPR015300 -
Glsi01g0319 436 SMART B3_2 6 98 IPR003340 GO:0003677
Glsi01g0319 436 SMART B3_2 300 395 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0319 Glsi-ChrGlsi01 2638375 2641573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0319 1 394 B3 DNA Binding Superfamily AT3G18990 51.392 7.94e-132 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi01g0319 B3 2.3e-16 CL0405