Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0298 ATGGGTTCGCTTCCTCCAGAACTGAGCTTGGATTTGAGACCCACTTTTGTTCCCAAGACGATCAGTGATTTTCTCTACGAGCTTTACACGATCGGAAATGCCGCCGACAAGTTGTCGAGGCTAGATGATTTTCTCAAGAGATTGGAAGAGGAAATGACGAAGATCGACGCTTTTAAGCGTGAGCTTCCTCTTTGCATGCTCCTCTTAAATGATGCAATCTTAACTCTGAAGGAGGAATCAGCAAAATGTAGAACTTCTATTTCTCAGCCTGTATTGGAAGAATTTATTCCCTTGAAGAAAGAATGTGTTCAGAAAGAGGAAAATGAACCAGAAAAGGAAAGCAAAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTCTGGAATACTGCTAATCATCCTACTACAAATAATGCCTATGAGCCAAAACAACACTATAAATTAGAAAACAAGAAAAGGGAAGAGGAAGGACAATCTGTGGCTGAGGACCCCTTCCAATCTCGTAGAAATAGAAATGGGTGCAGGGCTTTCTTGCCTTTTACAACATACTCTGCTATGCCGGTTACAGCAGTGGCAACCAAGGAAGAGAAGGAAGACTCTATCAATGGGCTTTCTCTTCTCACTCCTGGAACTAAAAGTATGAAGGAGGGATCTGGTTCAAGTGGATCAAGAACCAGCTCTGGCAGAGCAGTTTCCTCCTCTACTCCCAGTGCACAGCCAATTATACCCGCTGGACAGCAGCAGTCACAGCAGCAGATTGCCCGAAAACAGAGGAGGTGCTGGTCGCCGGAGTTGCACCGTCGTTTTGTCAATGCGCTACAACAACTTGGAGGTTCTCAAGCGGCAACTCCCAAGCAAATTAGAGAACTCATGCAGGTCGATGGCCTGACCAACGATGAAGTGAAGAGTCATTTACAAAAATATCGACTTCACACTCGAAGAGTCCCAGCTACGACGGCTGCACCTGCTAATCAGTCTGTTGTAGTTCTTGGAGGCTTGTGGATGTCCCCAGATCAGTACAATGACTCCTCAAAGGCTAGCAGTTCTGGGTCTGGTTCTCCTCAAGGCCCCCTCCAGTTAGCAGCATCTGGTGGAGGGACTTCCCCAACTGAAGGTGACAGCATGGAAGATGATGAAGATGAAAAATCTGAGAGCTATAGCTGGAAAAGTCACGTTCAGAAACCTGGAAAAGATGTATAG 1197 0.457 MGSLPPELSLDLRPTFVPKTISDFLYELYTIGNAADKLSRLDDFLKRLEEEMTKIDAFKRELPLCMLLLNDAILTLKEESAKCRTSISQPVLEEFIPLKKECVQKEENEPEKESKDKKNWMSSVQLWNTANHPTTNNAYEPKQHYKLENKKREEEGQSVAEDPFQSRRNRNGCRAFLPFTTYSAMPVTAVATKEEKEDSINGLSLLTPGTKSMKEGSGSSGSRTSSGRAVSSSTPSAQPIIPAGQQQSQQQIARKQRRCWSPELHRRFVNALQQLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPATTAAPANQSVVVLGGLWMSPDQYNDSSKASSSGSGSPQGPLQLAASGGGTSPTEGDSMEDDEDEKSESYSWKSHVQKPGKDV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0298 398 MobiDBLite consensus disorder prediction 338 398 - -
Glsi01g0298 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 252 312 IPR017930 -
Glsi01g0298 398 SUPERFAMILY Homeodomain-like 253 313 IPR009057 -
Glsi01g0298 398 FunFam Myb family transcription factor 254 312 - -
Glsi01g0298 398 MobiDBLite consensus disorder prediction 203 255 - -
Glsi01g0298 398 Pfam Myb-like DNA-binding domain 257 308 IPR001005 -
Glsi01g0298 398 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 389 IPR044787 GO:0003700|GO:0006355
Glsi01g0298 398 MobiDBLite consensus disorder prediction 381 398 - -
Glsi01g0298 398 MobiDBLite consensus disorder prediction 191 255 - -
Glsi01g0298 398 Coils Coil 31 61 - -
Glsi01g0298 398 NCBIfam myb-like DNA-binding domain, SHAQKYF class 255 310 IPR006447 GO:0003677
Glsi01g0298 398 Gene3D - 254 312 - -
Glsi01g0298 398 MobiDBLite consensus disorder prediction 338 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0298 Glsi-ChrGlsi01 2444197 2446267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0298 7 337 G2-like Transcription Factor Family AT2G03500 40.346 2.39e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi01g0298 Myb_DNA-binding 6.5e-07 CL0123