Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0291 ATGTCTAGCGGAAGAAGCTCCACAACTTCAAAATTCACAGAGAATGAGATTAATGAGCTTGTTTCCAGGTTGCAAGCAATGCTTCCACAGCTGAACCAAAGAACCAACTCAAGGGAATCAATATCGAAGATTTTGAAAGAAACTTGCTGTCACATCAACAAGCTTCAGAAAGAGGTGGAAGAGCTCAGTGAAAGGCTATCAGGGCTGATGAATTCTGTGGATATCAATGATATTGACGAAGAACGTCTTAGGAATATTTTACAACAATAA 270 0.3926 MSSGRSSTTSKFTENEINELVSRLQAMLPQLNQRTNSRESISKILKETCCHINKLQKEVEELSERLSGLMNSVDINDIDEERLRNILQQ 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0291 89 Coils Coil 45 72 - -
Glsi01g0291 89 Pfam Helix-loop-helix DNA-binding domain 16 56 IPR011598 GO:0046983
Glsi01g0291 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 73 IPR036638 GO:0046983
Glsi01g0291 89 Gene3D - 13 88 IPR036638 GO:0046983
Glsi01g0291 89 PANTHER DNA BINDING PROTEIN 1 89 IPR044172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0291 Glsi-ChrGlsi01 2403293 2403700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0291 2 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 45.946 4.00e-15 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi01g0291 HLH 0.00026 No_clan