Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0288 ATGGGAGTTTGTACCTCCAAGCCGCCGAAGCCGAACCCATATGTGGGTCGGGAACCAGAAGAAGACCGTGATCCATATGACCCTTCGCAAATCCCAAAATCCCCACTTACTCCCATCACCAACAATTACCCGAACCGGAAGGATGAGGTCATTGCAGGGAAGCAGTCTCCTTTCTTCCCCTTCTACAGTCCTAGTCCAGCTCACTTTCTCAAGAAATCTCCGGCGCCGACGGGAGGGAGCAAGAGTGCGAGTTCGACGCCTAGGAGATTTTTCCGGCGCCCTTTCCCTCCGCCGTCTCCAGCCAAACACATAAAGGCTGCGTTAGCGAGGAGACAAGGAAAGAAGGCTGAAAAGGCGATACCCGAAGAAGGAGAGGAAGAATCGATTGGGGCGGTGGATTTGGACAAGAGGTTTGGGTTTTCGAAGGAGTTCACCAGTAGACTGGAAGTTGGGGAAGAAGTGGGCAGAGGACATTTTGGGTACACCTGCACTGCTAGGTTCAAGAAAGGCGAGCTTAAGGGTCAGCGAGTTGCGGTAAAGGTCATCCCAAAAGCTAAGATGACAACAGCAATTGCAATTGAAGATGTAAGAAGAGAGGTGAAAATATTACGAGCTTTGACTGGACACAACAATCTGGTACAATTCTATGATGCATTTGAAGACCATGATAATGTCTACATTGTAATGGAGTTATGTGAAGGAGGTGAGCTTTTAGATAGGATATTGTCAAGAGGAGGGAAATACTCAGAAGATGATGCAAAGGCTGTCATGGTGCAAATACTAAATGTTGTTGCATTCTGTCATCTTCAGGGCGTGGTGCACCGAGATCTTAAGCCGGAGAATTTTTTGTATGCTTCAAAGGATGAAAATTCTGAGTTAAAAGCCATAGACTTTGGGTTATCAGACTTTGTCAAACCAGATGACAGGCTTAATGATATTGTTGGAAGTGCATACTATGTGGCCCCTGAAGTTCTACATAGATCTTACAGTACAGAAGCTGATGTGTGGAGTATAGGCGTGATAGCATATATTCTTTTATGCGGTAGTCGTCCATTTTGGGCACGAACAGAGTCTGGTATTTTTAGGGCTGTTTTGAAAGCTGATCCGAGCTTTGATGAAGCTCCCTGGCCTTCTTTATCTGCTGAAGCAAGAGATTTTGTCAGGCGCCTATTAAATAAGGACCCACGGAAGCGACTATCAGCTGCTCAGGCTCTAAGTCATCCTTGGATACGGAATTACAATAGTGTAAAAGTTCCTCTTGACATTTTCATATTTAGGCTCATGAAGACTTATATGCGATCATCATCTTTGCGCAAGGCTGCCTTAAGGGCCTTGTCAAAGACATTGACTACTGATGAGCTCTACTATCTGAGGGAGCAATTTGCTCTGCTGGAGCCAAGCAAAAATGGCAGCATAACATTAGAGAACATCAGGAAGGCGCTGATGAAGCATGCAACAGATGCCATGAAAGAGTCCCGCATTTCTGATTTTATTGCCTCGTTAAATTCATTACAATATAGAAGAATGGATTTTGAAGAATTTTGTGCAGCCGCATTGAGTGTGCATCAGCTTGAAGCTCTTGATCGTTGGGAACAACATGCCCGCTGTGCGTATGAACTTTTTGAGAAAGACGGAAACAGGGCTATTGTCATTGAAGAACTTGCTTCAGAACTTGGACTTGGTCCTTCTATCCCTGTTCATGTCGTACTCCTCGACTGGATAAGGCACACCGATGGGAAGCTAAGCTTTCTTGGATTTATCAAATTATTACATGGTGTATCTAGCCGAAATCTTGCGAAGGTGCAATAA 1809 0.4505 MGVCTSKPPKPNPYVGREPEEDRDPYDPSQIPKSPLTPITNNYPNRKDEVIAGKQSPFFPFYSPSPAHFLKKSPAPTGGSKSASSTPRRFFRRPFPPPSPAKHIKAALARRQGKKAEKAIPEEGEEESIGAVDLDKRFGFSKEFTSRLEVGEEVGRGHFGYTCTARFKKGELKGQRVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHNNLVQFYDAFEDHDNVYIVMELCEGGELLDRILSRGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYASKDENSELKAIDFGLSDFVKPDDRLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSAEARDFVRRLLNKDPRKRLSAAQALSHPWIRNYNSVKVPLDIFIFRLMKTYMRSSSLRKAALRALSKTLTTDELYYLREQFALLEPSKNGSITLENIRKALMKHATDAMKESRISDFIASLNSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLLDWIRHTDGKLSFLGFIKLLHGVSSRNLAKVQ 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0288 602 ProSiteProfiles Protein kinase domain profile. 148 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0288 602 MobiDBLite consensus disorder prediction 14 28 - -
Glsi01g0288 602 FunFam CDPK-related kinase 1 141 236 - -
Glsi01g0288 602 SMART serkin_6 148 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0288 602 CDD STKc_CAMK 149 409 - -
Glsi01g0288 602 MobiDBLite consensus disorder prediction 69 101 - -
Glsi01g0288 602 SUPERFAMILY Protein kinase-like (PK-like) 144 447 IPR011009 -
Glsi01g0288 602 Gene3D Phosphorylase Kinase; domain 1 150 237 - -
Glsi01g0288 602 Gene3D - 431 588 - -
Glsi01g0288 602 SUPERFAMILY EF-hand 438 592 IPR011992 -
Glsi01g0288 602 PANTHER SERINE/THREONINE-PROTEIN KINASE 135 570 - -
Glsi01g0288 602 ProSitePatterns Protein kinases ATP-binding region signature. 154 180 IPR017441 GO:0005524
Glsi01g0288 602 Gene3D Transferase(Phosphotransferase) domain 1 238 430 - -
Glsi01g0288 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Glsi01g0288 602 Gene3D - 450 519 - -
Glsi01g0288 602 Pfam Protein kinase domain 149 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0288 602 FunFam CDPK-related kinase 3 140 312 - -
Glsi01g0288 602 FunFam CDPK-related kinase 1 446 519 - -
Glsi01g0288 602 FunFam Calcium-dependent protein kinase SK5 320 416 - -
Glsi01g0288 602 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0288 Glsi-ChrGlsi01 2383527 2389062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0288 1 598 EF-hand Containing Proteins AT3G50530 71.787 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi01g0288 Pkinase 8e-71 CL0016