Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0284 ATGGCTCAGCCAACTACGAACGGCGCCGATCTGAATCATCAGCAGCAGCAGCAACAGTGGACGCCGCCGCCGCCGCAGTATCAGCAGCAATGGATGGGCGTACAGTACCCGGCTGCTGCCATGGCCATGATGCAGCACCAGATGATGATGTACCCGCAGCATTATATCCCTTATGTTCACGGCCATTATCAGCCGCCTCACCACCCGCAGCTAAAGCAGCCGTCGCCGATTCAGCACCACCAGCAGGGCTCCGCCGATGAGATCAGGACGATCTGGCTCGGCGACCTTCACCATTGGATGGACGAGAACTACCTCCATAGCTGCTTTGCTCTCACAGGCGAGGTAGTCTCAGCCAAGGTTATACGAAATAAGCAAACAGGCCAGTCAGAGGGATATGGATTTGTTGAGTTTTATTCACGAGCAACAGCTGAGAAAGTTTTGCAGAGCTATAATGGTACTATGATGCCAAGTACAGATCAGCCATTTCGCCTAAATTGGGCTACATTCAGTACGGGTGATAGGCGATCTGATGCTAGTTCTGATCTCTCTATATTTGTGGGGGACTTGGCTGTAGATGTTACTGATGCTATGCTGCAGGAAACCTTTGCAAGCAGATATTCATCTGTTAAGGGAGCAAAAGTTGTTTTTGATTCTAACTCTGGTCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGCTGATGAAAATGAGAGATCCAGGGCAATGACTGAAATGAATGGTGTTTATTGTTCAAGTAGGCCAATGCGAGTAGGTGTTGCAACACCCAAGAAATCGTATGGATATCAACAACAATATTCTTCACAAGCTGTGGTGTTGGCTAATGGACATTCATCTAATGGTGCTATGATCCAAGGTTCCCAGTCTGAAGGGGACTTTAGTAACACAACTATATTTGTTGGAGGGCTTGATTCTGATGTCAGTGATGAAGATCTCAGACAACCATTTTTGCAATATGGTGAGGTTGTCTCTGTAAAAATACCAGTGGGAAAAGGGTGTGGTTTTGTTCAATTTGCTAACAGAAAGAATGCTGAGGAAGCAATTCAGGCGTTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGACGGATTCCAATGGAGGGCAGGGTTATGGAGGCCATGGGTATGCGGTGAGACAGTATCAGGATATGAATACGCATGCTGCTGCTACAGTTCAAGGGGCTTCCTAA 1245 0.4739 MAQPTTNGADLNHQQQQQQWTPPPPQYQQQWMGVQYPAAAMAMMQHQMMMYPQHYIPYVHGHYQPPHHPQLKQPSPIQHHQQGSADEIRTIWLGDLHHWMDENYLHSCFALTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQSYNGTMMPSTDQPFRLNWATFSTGDRRSDASSDLSIFVGDLAVDVTDAMLQETFASRYSSVKGAKVVFDSNSGRSKGYGFVRFADENERSRAMTEMNGVYCSSRPMRVGVATPKKSYGYQQQYSSQAVVLANGHSSNGAMIQGSQSEGDFSNTTIFVGGLDSDVSDEDLRQPFLQYGEVVSVKIPVGKGCGFVQFANRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGQGYGGHGYAVRQYQDMNTHAAATVQGAS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0284 414 FunFam Polyadenylate-binding protein RBP47B 170 272 - -
Glsi01g0284 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 169 IPR000504 GO:0003723
Glsi01g0284 414 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 80 377 - -
Glsi01g0284 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 366 IPR000504 GO:0003723
Glsi01g0284 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 157 IPR000504 GO:0003723
Glsi01g0284 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 253 IPR000504 GO:0003723
Glsi01g0284 414 Gene3D - 283 405 IPR012677 -
Glsi01g0284 414 FunFam Polyadenylate-binding protein RBP47 283 399 - -
Glsi01g0284 414 MobiDBLite consensus disorder prediction 1 27 - -
Glsi01g0284 414 FunFam Polyadenylate-binding protein RBP47B 88 168 - -
Glsi01g0284 414 Gene3D - 88 168 IPR012677 -
Glsi01g0284 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Glsi01g0284 414 SUPERFAMILY RNA-binding domain, RBD 170 279 IPR035979 GO:0003676
Glsi01g0284 414 SUPERFAMILY RNA-binding domain, RBD 293 394 IPR035979 GO:0003676
Glsi01g0284 414 CDD RRM2_SECp43_like 181 260 - -
Glsi01g0284 414 CDD RRM1_SECp43_like 90 170 - -
Glsi01g0284 414 SUPERFAMILY RNA-binding domain, RBD 54 172 IPR035979 GO:0003676
Glsi01g0284 414 CDD RRM3_NGR1_NAM8_like 300 371 - -
Glsi01g0284 414 Gene3D - 169 276 IPR012677 -
Glsi01g0284 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 373 IPR000504 GO:0003723
Glsi01g0284 414 SMART rrm1_1 90 165 IPR000504 GO:0003723
Glsi01g0284 414 SMART rrm1_1 183 257 IPR000504 GO:0003723
Glsi01g0284 414 SMART rrm1_1 302 369 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0284 Glsi-ChrGlsi01 2347525 2352026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0284 91 380 Eukaryotic Initiation Factors Gene Family AT4G34110 28.814 6.80e-29 117