Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0272 ATGGTGGTCTCCAAGTCCACATACGAGGAATGCAGGCGACAAAGGCTGGAAGAGAACAAGAAGAGGATGGAGGAGCTAAACCTCAACAAGCTAGCTCGTGCTTTGAAACCTTCCCCCTCAACACCTAAGCCCTCCCCTGTGGGTATTTTGGAAGACTGTTTTTCTGTCTCAGTTTCTCTTTTGCTTCAGAAGGTGTTCTCAAGTTTGGATTTTGTTCCTTCAGGTGAAGCCGAGGGTGCCTCGCCAGCCAGTGAGCCCTTCTTCGGCGCCGATGAGAAGGTTCCCCTTGGACCTCCGAAGAGACTAAGAAGGGCCTATCAGAGAAGGGATCGAGTTTATGCTTCAGATGAAGTTAGGCAATATGCAATTGAAAGAGCAGATGAACTTCTATCTGGTTTAGGTTCTAAGTTCCCAAGTTTTATCAAGCCTATGCTCCAGTCACATGTCACTGGAGGATTTTGGCTGGGTCTCCCAGTTCAGTTTTGCAAGTCCTATCTCCCTCACCATGATGAAACAATAGCTTTGGTGGATGAGGATGGGAATGAGTCTCTAACCAAATACCTTGCTTATAAAACTGGTCTCAGTGGCGGTTGGCGTGGGTTTGCAATTGATCATGAACTAGTTGATGGGGATGCATTGGTGTTTCAATTGATTAAACCCAGTAAATTTAAGGTGATCATTAAGTACAAGGTAGCTCTTGTTGATGGTTTCTCACTGCAAGCACTTCTAATTTTGATACCGTAG 744 0.457 MVVSKSTYEECRRQRLEENKKRMEELNLNKLARALKPSPSTPKPSPVGILEDCFSVSVSLLLQKVFSSLDFVPSGEAEGASPASEPFFGADEKVPLGPPKRLRRAYQRRDRVYASDEVRQYAIERADELLSGLGSKFPSFIKPMLQSHVTGGFWLGLPVQFCKSYLPHHDETIALVDEDGNESLTKYLAYKTGLSGGWRGFAIDHELVDGDALVFQLIKPSKFKVIIKYKVALVDGFSLQALLILIP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0272 247 CDD B3_DNA 138 227 IPR003340 GO:0003677
Glsi01g0272 247 Gene3D - 115 230 IPR015300 -
Glsi01g0272 247 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Glsi01g0272 247 SUPERFAMILY DNA-binding pseudobarrel domain 134 227 IPR015300 -
Glsi01g0272 247 Coils Coil 13 33 - -
Glsi01g0272 247 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 46 227 IPR044837 -
Glsi01g0272 247 SMART B3_2 140 231 IPR003340 GO:0003677
Glsi01g0272 247 Pfam B3 DNA binding domain 140 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0272 Glsi-ChrGlsi01 2266200 2269443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0272 1 227 B3 DNA Binding Superfamily AT3G19184 48.963 9.60e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi01g0272 B3 1.4e-14 CL0405