Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0271 ATGGAAGACGAAGATGAAGTCGTCTCGTGTTCTTCTGATTCCGATGTTGATTACGCCGGTCAATGTGAAGAAGGCCTCGATGAGGATGACCGATTGGAGGACGAGTTTTTCTCTCCGCCCGATGACGAGCGGAAATCGCAAAATGTTGATGCTCTTGTGAGGGGAAACCTCATCGTGAAGAAACAATCGTTGCTTCCACGAGTTCTTTCTGTACCACAAGGAGCAGCTGTTTGTAGAAGACCCTTTAAACCTCCCTGCTCCAATGGTTACAATGATCGAAATGAAGAGCTTACCCGTCGCCTTTGGGCTCGGAAAAAGTTTGTCCCATGGGGCTCTTCCAGACCGGTATTGATTGCAATTACCAACCGGTTGAATGCACCCATAAACGCTGAAAAAGATTATGCCGAGGAGAAAGTGTCTTTGCCACCTGGGATTGATCCTCTAGTGCTGTGGCAGCCCGAAGAATATGAGAATGGGGTTTGTACTTTGACGCCAATAGCAGTGGACCCATTACTTGTTCGTTTCCTTAGACCACATCAGAGAGAAGGGGTTCAGTTTATGTTTGAATGTGTTTCAGGGCTATGTAGCATAGCAAATATTCATGGATGCATCCTGGCAGATGATATGGGTTTGGGGAAGACGTTGCAGTCAATCACATTACTGTATACTCTTCTTTGCCAAGGGTTTGATGGGAAGCCAATGGTTAGAAAGGCCATCATTGTGACCCCTACCAGCCTTGTAAGCAATTGGGAAGCTGAAATTAAGAAATGGATTGGAGAAAGAATTCAGCTTGTTGCTCTATGTGAAAGCACAAGAGACGATGTTGTTCTTGGGATTGACAATTTCACAAGTCCCCGCAGCTCTTTACAAGTGCTGATTGTTTCATATGAGACATTCCGAATGCATTCATCAAAATTTAGCCATAGCGAATCTTGTGACCTTCTTATATGTGATGAGGCTCACAGGCTGAAAAATGATCAGACAATAACAAATCGGGCATTGGCTGCGCTCTCATGCAGACGTAGAATCTTGTTGTCAGGAACTCCTTTGCAGAATGACCTAGAAGAATTCTTCGCTATGGTTAACTTCACTAATCCTGGAATATTGGGTGATATAGCACATTTTCGCCGTTACTTTGAGGCACCGATTATTTGTGGAAGAGAACCTACTGCCACTGCAGAAGAGAAGAAGCTAGGTGCTGAACGCTCTTCTGAGTTAAGTGCAAAAGTTAATCAGTTTATATTAAGAAGGACTAATGCATTATTATCGAATCACTTGCCACCAAAGATAATTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCGGACCTATATAAACATTTTATACAATCCAAAAATGTTAAACGGGCTATAGTTGAAGAAGTGAAGCAATCGAAGATTTTGGCCTACATAACAGCTCTTAAAAAGTTGTGCAACCATCCAAAGCTTATATATGATACTATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGCATTCGGTTCTTCCCGCCAGAGATGTTATCTGGAAGATCTGGCTCATGGACAGGAGGGGATGGAGCTTGGGTTGAGCTGTCAGGGAAAATGCATGTCTTAGCAAGATTGCTTGCCCAGTTACGGCAGAGGACCAATGACCGCATTGTCCTTGTCTCGAACTACACACAGACTCTGGATCTTTTTGCTCAATTATGTCGGGAACGAAGGTATCCACACTTGAGGCTCGATGGTACCACTTCAATCAGTAAAAGGCAGAAGTTGGTCAACCGCTTTAATGACCCATCTAAGGATGAATTCATTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGCCTCAATTTGATTGGTGGAAGTCGATTAGTCTTGTTCGATCCCGACTGGAACCCAGCAAATGATAAACAAGCTGCCGCAAGAGTGTGGAGGGATGGACAGAAGAAAAGAGTTTACATTTATAGATTTTTGAGTGCGGGAACTATTGAAGAAAAGGTCTACCAGCGGCAGATGTCAAAAGAAGGCTTACAAAAAGTCATTCAGCAGGAGCAAACCGATAACCTTGTGACACAGGGTAACCTTCTTTCGACAGAAGACCTCCGCGATCTGTTCACATTTCATGAGAGTGTCAAGTCAGAGATTCATGAAAAGATGCAGTGCACTCGGTGCCAAGCATATGATGATGGGCCTCAGAGCACTGATGGGAAATATGCAGCCCAATCAACAATAATTAACGGCAACTCTGATGAAGAAATCTCTGACATTGGTGGATTTGCAGAAATCACAGGCTGCTTACAGAAGTTAAAGAGATCAGAAAAACAGGTAGGGACCCCCTTGGAAGAAGATTTAGGTAGCTGGGGCCATCATTTTTTTCCAGCATCGGTACCAGATGCTATCTTTCAGGCTTCAGCAGGAGATGAGGTGACCTTTGTGTTCACAAACCAAGTTAATGGAAAGCTGGTACCGATTGATTCAACTGTGAGTCCAAAACTACAGCAAGAGGAGCCAAAGCCAAAGCAGAACATCAAACAAAATTCCATTCTTGTTTCTTTACATCAGAGACCACCATTGCAGCCTGCTTCTGGTGTTGCTATTACATCATCTTACTCTCCCAAGCCTTCGACAAGGCTAGCTCTGAATTCTATTAGAACCAACAAAAATATTTCAACACATGCACCATTAAAGACCAAAAACTCTCCTGTAAATCAATTACCTCAGAAAAGATCATGTCCTGTTTATGTTGGTACGAGTTTCGCTCTTACATTGCGGCAAGATGATGCAAAAGTCAACGGAAATGTTCTTCTAGTAGAGAAAAGGAAGGGAGGTGGATTCATTTGTTTGGTTCTATGTGGACCCCATGTAGCTTATGCATGGTCAACTAAACAGAAAAGGTTCTTACACGTGCCAGCACTAGGAGATGGACACCGTGGGGACTCTAAATCTTCGCCCTGTATCTTTCCCTCTTTTATTAATCAACGTAGTCATCGTAGCAACGCTCCAAGGACGATAATGGAACTCAAACCTGGGTTGTCAGCACTGGTCACTGGGGGTGCCGATGGAATAGGGAAAAGTCTTTGCCTAGCTCTTGCAGAGAAGGGTATATTTGTCACAGTTGTTGATTTATCTGAAGAAAAGGGGAGAGAAGTGACATCCCTTGTTGAGAAAATTAACTCCAAGTTTCATTCCAAGTTAGAACATGCGTCTGCCATCTTTGTGAAATGCGATGTGTCTAACACAAGGGAGATATCTGCTGCATTTGAGAAGCATTTTAAGACATACGGAGGACTAGACATTTGTATTAACAGTGCAGGGATTAGTAATCCTATACGATTCCATAAGGATAAAACGGATGGCACTCAGTCGTGGAGGCACACTATTAATGTGAATTTGGCTGGTGTTATTGATTGCACTCGCCTAGCAATTGGAACCATGGAAGCTGCCAAAAGGCCTGGTGTGATTATCAACTTGGGTTCTGCTTCTGGTCTTTATCCAGCGTATGTGGACCCTGTCTATTCTGCCTCTAAAGGTGGTGTTGTTATGTTTTCTAGATCACTTCGTCCCTACAAACGCCAAGGAATTCGAGTCAATGTGCTTTGCCCTGAGTTTGTTCAAACAGAGATGGGCTCAAAGGTGGATCCTCAATTTATCAGTTTGATGGGGGACTTTGTACCTATGGAAATGGTGGTGAAAGGTGCTTTTGAGCTCATTACGGATGAGAGTAAAGCTGGTTCATGCCTATGGATTACAAATCGTCGTGGTATGGAATACTGGCCCACCCCATCAGAAGAAACAAAGTACTTGATAAAATCCGCCAGTTTTAGAAAAAGATCTGAGTTCAAAGCTGCACCGATTAAACTCCCTGAGAGTTTTGAGAAAATAGTTGTTCACACCTTGACTAACAACTTCCGGAATGCTACCAGCATAGTGAGAACACCACTGAGATTACCTGTCAAACCACATTTTGTTCTTGTTAAGTTGATTTATGCTGGTGTAAATGCTAGTGATGTAAATTTCAGCTCAGGTCGCTATTTCAGTGGCAAGGATAATGATATTGCTTCTCATCTTCCATTTGATGCTGGATTTGAGGCTGTAGGAGTAATTGCAGCAGTAGGGGATTCTGTCACTGACTTGAAAGTTGGTATGCCTTGTGCGATCATGACTTATGGAGGGTATGCAGAATTTATAATGGTTCCTTCAAAACACGTCCTTCCAGTGGCTAGACCAGATCCAGAAGTTGTTGCCATGCTTACTTCAGGACTAACAGCCTCAATTGCTCTTGAAAAGGCAGGACAGATGGAATCTGGAAATGTAGTCCTTGTTACTGCTGCTGCTGGAGGGACTGGGCAATTTGCTGTTCAGCTTGCAAAATTAGCAGGAAATAAAGTGGTTGCAACTTGTGGAGGTGGGGCAAAGGCCAAGCTTCTGAAACAATTGGGAGTTGACAGAGTCATAGACTATAAAAGTGAAGATATAAAAACCGTTCTAAGAAAAGAGTTCCGAGAAGGCATTGACATCATCTATGAGTCTGTTGGTGGAGACATGTTCAACTTGTGCTTGGGTGCTTTAGCAGTCTATGGACGGCTCATTGTGATTGGAATGATTTCTCAGTATCAAGGAGAGCATGGTTGGACGCCATCAAACTACCCTGGACTATGTGAGAAAATCTTAGCGAAGAGTCAAACTGTGGCTGGCTTTTTCCTGGTACAATATAGTCATTTGTGGCGACAACACCTTGACAAACTGTATAACCTTTACTCTACGGGAAAGCTAAAGGTTGCTGTAGATCCAAGGAGATTTTTGGGCCTAAACTCTGTTGTAGATGCAGTTGAGTATCTACATTCAGGCAAAAGTGTTGGGAAGGTTGTTGTCTGCATTGACCCAGCATTCCATCAAGTAGCCAAATTATGA 4905 0.433 MEDEDEVVSCSSDSDVDYAGQCEEGLDEDDRLEDEFFSPPDDERKSQNVDALVRGNLIVKKQSLLPRVLSVPQGAAVCRRPFKPPCSNGYNDRNEELTRRLWARKKFVPWGSSRPVLIAITNRLNAPINAEKDYAEEKVSLPPGIDPLVLWQPEEYENGVCTLTPIAVDPLLVRFLRPHQREGVQFMFECVSGLCSIANIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWIGERIQLVALCESTRDDVVLGIDNFTSPRSSLQVLIVSYETFRMHSSKFSHSESCDLLICDEAHRLKNDQTITNRALAALSCRRRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYFEAPIICGREPTATAEEKKLGAERSSELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSDLYKHFIQSKNVKRAIVEEVKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGDGAWVELSGKMHVLARLLAQLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGTTSISKRQKLVNRFNDPSKDEFIFLLSSKAGGCGLNLIGGSRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDNLVTQGNLLSTEDLRDLFTFHESVKSEIHEKMQCTRCQAYDDGPQSTDGKYAAQSTIINGNSDEEISDIGGFAEITGCLQKLKRSEKQVGTPLEEDLGSWGHHFFPASVPDAIFQASAGDEVTFVFTNQVNGKLVPIDSTVSPKLQQEEPKPKQNIKQNSILVSLHQRPPLQPASGVAITSSYSPKPSTRLALNSIRTNKNISTHAPLKTKNSPVNQLPQKRSCPVYVGTSFALTLRQDDAKVNGNVLLVEKRKGGGFICLVLCGPHVAYAWSTKQKRFLHVPALGDGHRGDSKSSPCIFPSFINQRSHRSNAPRTIMELKPGLSALVTGGADGIGKSLCLALAEKGIFVTVVDLSEEKGREVTSLVEKINSKFHSKLEHASAIFVKCDVSNTREISAAFEKHFKTYGGLDICINSAGISNPIRFHKDKTDGTQSWRHTINVNLAGVIDCTRLAIGTMEAAKRPGVIINLGSASGLYPAYVDPVYSASKGGVVMFSRSLRPYKRQGIRVNVLCPEFVQTEMGSKVDPQFISLMGDFVPMEMVVKGAFELITDESKAGSCLWITNRRGMEYWPTPSEETKYLIKSASFRKRSEFKAAPIKLPESFEKIVVHTLTNNFRNATSIVRTPLRLPVKPHFVLVKLIYAGVNASDVNFSSGRYFSGKDNDIASHLPFDAGFEAVGVIAAVGDSVTDLKVGMPCAIMTYGGYAEFIMVPSKHVLPVARPDPEVVAMLTSGLTASIALEKAGQMESGNVVLVTAAAGGTGQFAVQLAKLAGNKVVATCGGGAKAKLLKQLGVDRVIDYKSEDIKTVLRKEFREGIDIIYESVGGDMFNLCLGALAVYGRLIVIGMISQYQGEHGWTPSNYPGLCEKILAKSQTVAGFFLVQYSHLWRQHLDKLYNLYSTGKLKVAVDPRRFLGLNSVVDAVEYLHSGKSVGKVVVCIDPAFHQVAKL 1634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0271 1634 Gene3D - 439 708 - -
Glsi01g0271 1634 FunFam DNA repair and recombination protein RAD54-like 523 694 - -
Glsi01g0271 1634 CDD SF2_C_SNF 528 656 - -
Glsi01g0271 1634 PRINTS Glucose/ribitol dehydrogenase family signature 1093 1104 IPR002347 -
Glsi01g0271 1634 PRINTS Glucose/ribitol dehydrogenase family signature 1144 1160 IPR002347 -
Glsi01g0271 1634 PRINTS Glucose/ribitol dehydrogenase family signature 1010 1027 IPR002347 -
Glsi01g0271 1634 PRINTS Glucose/ribitol dehydrogenase family signature 1190 1207 IPR002347 -
Glsi01g0271 1634 PRINTS Glucose/ribitol dehydrogenase family signature 1170 1189 IPR002347 -
Glsi01g0271 1634 SMART helicmild6 561 645 IPR001650 -
Glsi01g0271 1634 Gene3D - 1008 1267 - -
Glsi01g0271 1634 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 1150 1158 IPR002347 -
Glsi01g0271 1634 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 1170 1189 IPR002347 -
Glsi01g0271 1634 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 1093 1104 IPR002347 -
Glsi01g0271 1634 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 1157 1185 IPR020904 GO:0016491
Glsi01g0271 1634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 417 IPR027417 -
Glsi01g0271 1634 Pfam Helicase conserved C-terminal domain 536 644 IPR001650 -
Glsi01g0271 1634 CDD ADH_SDR_c_like 1011 1256 - -
Glsi01g0271 1634 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1010 1261 IPR036291 -
Glsi01g0271 1634 SMART ultradead3 172 375 IPR014001 -
Glsi01g0271 1634 Gene3D - 1413 1591 - -
Glsi01g0271 1634 Gene3D - 417 725 IPR027417 -
Glsi01g0271 1634 Pfam Zinc-binding dehydrogenase 1445 1578 IPR013149 -
Glsi01g0271 1634 Pfam Alcohol dehydrogenase GroES-like domain 1319 1384 IPR013154 -
Glsi01g0271 1634 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 367 IPR014001 -
Glsi01g0271 1634 FunFam Prostaglandin reductase 2 1413 1591 - -
Glsi01g0271 1634 SUPERFAMILY GroES-like 1302 1438 IPR011032 -
Glsi01g0271 1634 SMART PKS_ER_names_mod 1296 1622 IPR020843 GO:0016491
Glsi01g0271 1634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 722 IPR027417 -
Glsi01g0271 1634 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1410 1588 IPR036291 -
Glsi01g0271 1634 FunFam DNA repair and recombination protein RAD54 147 416 - -
Glsi01g0271 1634 Gene3D - 1294 1622 - -
Glsi01g0271 1634 Gene3D - 153 416 IPR038718 -
Glsi01g0271 1634 CDD Mgc45594_like 1288 1623 - -
Glsi01g0271 1634 CDD DEXHc_RAD54 176 417 - -
Glsi01g0271 1634 PANTHER SNF2/RAD54 FAMILY MEMBER 77 823 - -
Glsi01g0271 1634 Pfam SNF2-related domain 179 485 IPR000330 GO:0005524|GO:0140658
Glsi01g0271 1634 FunFam Predicted protein 439 513 - -
Glsi01g0271 1634 Pfam short chain dehydrogenase 1011 1211 IPR002347 -
Glsi01g0271 1634 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 534 695 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0271 Glsi-ChrGlsi01 2241140 2263560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0271 525 703 RAD5 or RAD16-like Gene Family AT5G43530 37.222 3.53e-24 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi01g0271 SNF2_N 7.4e-53 CL0023