Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0260 ATGACTCAAGCCACAGCTCAGAATGAGAAGAGTCTTGAGGATTTTGATCCTCAGAAGAAACCCAAAAGGAACAAGTTCGCTTTTGGTTGTGCCATTTTGGCTTCCATGACTTCCATCTTGCTTGGTTATGATATTGGAGTCATGAGCGGAGCAGCAATCTATATAAAAAGAGACCTCAAAGTTTCCGACGTGCAAATCGAAATCCTCCTAGGAATCATCAACCTCTACTCTCTCATAGGTTCGTGTCTTGCCGGAAGAACCTCCGACTGGATTGGTCGGCGTTACACCATCGTGTTCGCCGGCGTCATCTTCTTCGTCGGAGCCATTCTGATGGGGTTTTCTACAAACTATACGTTCCTTATGTTTGGCCGATTCGTCGCTGGCATTGGCATGGGTTATGCTGTCGTGATCGCCTTCGTGTACACCGCCGAAATCTCGCCTGCTTCCTACCGTGGATTCCTTACCTCCTTCCCCGAGGTTTTCATTAACGGAGGGATATTACTTGGATACATTTCAAATTTTGCATTTTCCAAGCTACCACTCAAATTGGGTTGGCGCCTCATGTTGGGAATCGGTGCAGTTCCATCAGCAGTTCTAGCAGTGGGAGTGTTAGCCATGCCCGAGTCGCCTCGGTGGCTTGTCATGCAGGGTCGGCTCGGTGAAGCCAAAGAAGTCCTTAACAAGACCTCAGACTCCAAGGAAGAGGCTCTGCTAAGGCTAGCCGACATAAAAGAAGCTGCTGGGATTCCGGAGAGCTGCAACGACGACGTCGTTCAAGTCACTAAAAAGCAAAGCCACGGTGACGGTGTATGGAAAGAATTGTTCCTCCATCCAACACCAGCCGTTCGTCACATCTTGATCGCCGCCTTAGGGATTCACTTCTTCCAACAAGCCTCTGGAGTAGACGCCATCGTTTTGTATAGCCCCACAATTTTCGGAAAGGCTGGAATCACATCGAACACACACAAGCTTCTAGCAACTGTAGCCGTTGGATTCGTTAAGACCATGTTTATCTTGGTGGCTACATTCACGTTGGATGGGGTCGGGCGGCGCCCTTTACTTTTGTGCAGCGTCGGCGGTATGATACTCTCTCATGTAGCTCTTGCTACGAGCCTCACGATCATTGATCATTCAGACACAAAGCTAATGTGGGCCGTCGGATTGAGCATAGCCACTGTGCTATCTTATGTCGCAGCGTTCTCAATTGGTGCGGGCCCTATCACGGGTGTTTATACCGCTGAGATCTTTCCGTTGAAGCTACGCGCTCAAGGTGTGTCCTTGGGAATTATGGTGAACAGGTTGACGAGTGGGGTCATTTCAATGACCTTTTTGTCCTTGGAGAGGGCCATCACTATAGGGGGAGCCTTCTTTCTCTTTGGGGGAATTGCGACTGTTGGATGGATCTTTTTCTATATCATGCTCCCTGAAACACGAGGTAAAACTCTGGAAGAAATGGAAGGGTCTTTTGGTAAATTCGGAAGAAATTTCAACACTAAGAAAAGAGTTAATGATAAGGACAATGATGACGGTAGCGGCCAAATCCAATTAGCGCCCGGCAGGTTAACTTAG 1569 0.4844 MTQATAQNEKSLEDFDPQKKPKRNKFAFGCAILASMTSILLGYDIGVMSGAAIYIKRDLKVSDVQIEILLGIINLYSLIGSCLAGRTSDWIGRRYTIVFAGVIFFVGAILMGFSTNYTFLMFGRFVAGIGMGYAVVIAFVYTAEISPASYRGFLTSFPEVFINGGILLGYISNFAFSKLPLKLGWRLMLGIGAVPSAVLAVGVLAMPESPRWLVMQGRLGEAKEVLNKTSDSKEEALLRLADIKEAAGIPESCNDDVVQVTKKQSHGDGVWKELFLHPTPAVRHILIAALGIHFFQQASGVDAIVLYSPTIFGKAGITSNTHKLLATVAVGFVKTMFILVATFTLDGVGRRPLLLCSVGGMILSHVALATSLTIIDHSDTKLMWAVGLSIATVLSYVAAFSIGAGPITGVYTAEIFPLKLRAQGVSLGIMVNRLTSGVISMTFLSLERAITIGGAFFLFGGIATVGWIFFYIMLPETRGKTLEEMEGSFGKFGRNFNTKKRVNDKDNDDGSGQIQLAPGRLT 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0260 522 ProSitePatterns Sugar transport proteins signature 1. 84 101 IPR005829 GO:0016020|GO:0022857|GO:0055085
Glsi01g0260 522 Gene3D MFS general substrate transporter like domains 20 491 IPR036259 -
Glsi01g0260 522 NCBIfam sugar porter family MFS transporter 15 485 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi01g0260 522 SUPERFAMILY MFS general substrate transporter 11 486 IPR036259 -
Glsi01g0260 522 ProSiteProfiles Major facilitator superfamily (MFS) profile. 30 478 IPR020846 GO:0022857
Glsi01g0260 522 Pfam Sugar (and other) transporter 30 487 IPR005828 GO:0016020|GO:0022857|GO:0055085
Glsi01g0260 522 PRINTS Sugar transporter signature 38 48 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi01g0260 522 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi01g0260 522 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi01g0260 522 PRINTS Sugar transporter signature 121 140 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi01g0260 522 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Glsi01g0260 522 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 24 491 IPR045262 GO:0015144
Glsi01g0260 522 CDD MFS_PLT 33 485 IPR044776 GO:0005351
Glsi01g0260 522 ProSitePatterns Sugar transport proteins signature 2. 126 151 IPR005829 GO:0016020|GO:0022857|GO:0055085
Glsi01g0260 522 FunFam probable polyol transporter 4 20 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0260 Glsi-ChrGlsi01 2163558 2166458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0260 1 505 Organic Solute Cotransporters AT3G18830 69.515 0.0 736