Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0241 ATGGCTTCAGATTCGAATTCCACTGCTTCCCCTCCATCTTCATCAAAATCGCAGCCACCGCCGCCGCCGCCACCACCACCACCACCACCACCATCAGATGATCAGAAATCACCACCTTCGGCATTGCCTCCACCACCATCCGAACAAAATTCTAACTCTTCGTCTTCCACATCACCGCCACCTTCAGGCAATGGCGAGGACAAGAGATCATCCAGCCCAGCACCGTCCCCGCCACTACCAGTCCCGTCGTCCCAAACATCTAAGCAAGGGTTTTCATCTCCACCTACACATCATTTATTGTCTCCACCAATACACAGGTCAACATCTGGGTCATCAGGTTCGGGTTCTGGTTTGCCATCGTCTGGGGATAACGGAGCCCAATTTGATATTACACCAGTTATAGCAATTGCAGCTGGAGCTGGAATATTGCTGCTTGTCGTTGTACTACTCACCATTGAATATTCAAAGAAGAAGAGATCAGAAAGTCCCATGTATTACTATAATCATGGAAACCACGCTGACGACCATTGCAAAAGTACAACTCCAAAACACCAACAATGGAATAATGGGTACGAATACAATAATGGTGAACAACACATTCATTTTATGCCACCAACCCCAGGTGTATGTGCAAAGGGTTGGGTAATAACACCACCTCCACCTCCCCAGCTGCATAGTAGTGACATGAGCAACTCTAGTTATTCTGGCCCACAAGGAACCCCCTTGCCACCCCCACACCCTTCAGTGGCCCTTGGATTCAACAAGAGCACTTTCACATTTGACGAGCTATCAGCTGCAACTGGTGGGTTTGCCCAAGGTAACCTTTTAGGTCAAGGGGGATTTGGCTATGTACACAGAGGTGTGCTACCCAATGGTAAGGAGATAGCAGTGAAGAGTCTCAAATCCGGTGGAGGACAAGGAGACAAAGAATTCCAAGCAGAGGTTGAAGTTATCAACCGTGTCCATCATCGTCATCTCGTGTCACTTGTTGGGTATTGCATTTCAGAGGGAAAAAACTTACTGGTATATGAATTTGTGCCTAACAAAACCCTGGAATTCCACCTTCATGGAAAAGATCGGCCTGTCATGGAATGGAGCACCAGGCTCAAAATTGCCATTGGATCAGCCAAAGGGCTTGCTTACTTGCATGAGGATTGCCACCCTCGAATTATTCATCGGGACATAAAGGGTCCAAACATTCTCATTGATGACAACTTTGAAGCCAAGGTGGCAGATTTTGGATTGGCGAAGTTTAATCAAGACCACAACACTCATATTTCTACTCGCGTAATGGGTACATTTGGGTATATGGCTCCTGAGTATGCATCAAGCGGTAAGCTAACTGAGAAGTCTGATGTCTTCTCATTTGGTGTGATGCTTTTGGAACTAATAACAGGACGGCCTCCTATAGACACAACTGGTGATTATGAGGAGGACAGTTTGGTCGAATGGGCTAGACCTCTTTGTACAAACGCATTGGAAAATGGAGACTATGAAGGATTGGTGGATCCACGAATGGAGAACAATTATGACAAGCAGGAGATGGCACGTATGGTAGCTTGTGCTGCTGCTAGTGTCAGGCACTCGGCAAGGACGAGACCAAAAATGAGCCAGATAGTACGAGCTCTGGATGGTAATGTCTCATTAGATGACCTGAGTGAAGGAGTGAAACCTGGTCAAAGTTCAATATTCAACAATTCTAGTGGTGAATATGATGCTAACACATACAATGCTGACATGAAGAGGTTTAGAAAGCTAGCATTGGATAGCAGCTATGCAAGCAATGACTTTGGTGGGACGAGTAATGAGCTTGGGGCTTACTCTTCAAGCAATGACTCTGTCGAATATGGCAAGCAGACAGACAGGAAGCCAGATGCACATTCCTTGAGAGACCTCTAG 1899 0.4645 MASDSNSTASPPSSSKSQPPPPPPPPPPPPPSDDQKSPPSALPPPPSEQNSNSSSSTSPPPSGNGEDKRSSSPAPSPPLPVPSSQTSKQGFSSPPTHHLLSPPIHRSTSGSSGSGSGLPSSGDNGAQFDITPVIAIAAGAGILLLVVVLLTIEYSKKKRSESPMYYYNHGNHADDHCKSTTPKHQQWNNGYEYNNGEQHIHFMPPTPGVCAKGWVITPPPPPQLHSSDMSNSSYSGPQGTPLPPPHPSVALGFNKSTFTFDELSAATGGFAQGNLLGQGGFGYVHRGVLPNGKEIAVKSLKSGGGQGDKEFQAEVEVINRVHHRHLVSLVGYCISEGKNLLVYEFVPNKTLEFHLHGKDRPVMEWSTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGPNILIDDNFEAKVADFGLAKFNQDHNTHISTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELITGRPPIDTTGDYEEDSLVEWARPLCTNALENGDYEGLVDPRMENNYDKQEMARMVACAAASVRHSARTRPKMSQIVRALDGNVSLDDLSEGVKPGQSSIFNNSSGEYDANTYNADMKRFRKLALDSSYASNDFGGTSNELGAYSSSNDSVEYGKQTDRKPDAHSLRDL 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0241 632 SUPERFAMILY Protein kinase-like (PK-like) 245 543 IPR011009 -
Glsi01g0241 632 MobiDBLite consensus disorder prediction 1 123 - -
Glsi01g0241 632 MobiDBLite consensus disorder prediction 14 46 - -
Glsi01g0241 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672|GO:0006468
Glsi01g0241 632 MobiDBLite consensus disorder prediction 599 632 - -
Glsi01g0241 632 MobiDBLite consensus disorder prediction 47 71 - -
Glsi01g0241 632 Pfam Protein tyrosine and serine/threonine kinase 273 542 IPR001245 GO:0004672|GO:0006468
Glsi01g0241 632 ProSiteProfiles Protein kinase domain profile. 270 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0241 632 Gene3D Phosphorylase Kinase; domain 1 247 345 - -
Glsi01g0241 632 FunFam Proline-rich receptor-like protein kinase PERK1 346 554 - -
Glsi01g0241 632 MobiDBLite consensus disorder prediction 220 244 - -
Glsi01g0241 632 SMART serkin_6 270 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0241 632 Gene3D Transferase(Phosphotransferase) domain 1 346 554 - -
Glsi01g0241 632 MobiDBLite consensus disorder prediction 599 615 - -
Glsi01g0241 632 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524
Glsi01g0241 632 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 141 586 IPR047117 -
Glsi01g0241 632 MobiDBLite consensus disorder prediction 616 632 - -
Glsi01g0241 632 MobiDBLite consensus disorder prediction 83 123 - -
Glsi01g0241 632 FunFam Proline-rich receptor-like protein kinase PERK8 244 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0241 Glsi-ChrGlsi01 1923511 1926541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0241 103 613 Trihelix Transcription Factor Family AT5G38560 46.498 3.58e-154 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Glsi01g0241 PK_Tyr_Ser-Thr 2e-45 CL0016