Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g0235 ATGTCGACGTCGGTCTCCGAAGATTCCTCCAGTAATGTTCTACATGAACTGACTAACACAACCCCTTTTCTGGGTTTGAAACTTTACATTGTGATATGCGTTTTCCTTGTAATCGTGCTGGTTCTTGTGCTTCTGATCTTCATCTTTCTCTGCATTCGGCGGAATCGAAGCTCAACGAAGCCCAAAATGCGAGTGAAACACAGCTCCGGCACAATTCCATTGGTCTCCAAGGAGATCGTAGAGGTAAAGGCCTTGGATCTCATCCCCTTGGATCTCATCCGGGACTGTGAAAACACAGAGCTTAAAATTGAAGATGTTAATCCAAGGAAAGAGGCGGAAGCGGAGGAGATCAAGGTTGAGTTTGAAAGAAGAAGAAAGAGCTGCGAAGAGAGTGATGTGGCCGTGGAGGCTCCTAATATAGGGTGGGGCCGTTGGTATAGCTTGAAGGAGCTGAACCTTGCGACACGTGACTTCGTCGATGAGAATGTGATCGGAGAGGGAGGTTATGGGATTGTGTACAGAGGAGTTCTGCATGATGGGTCTGTGGTGGCTGTGAAGAATCTTCTAAACAACAAGGGTCAAGCGGAGAAGGAATTTAAGGTGGAGGTTGAAGCCATTGGAAAGGTGAAGCATAAAAATTTGGTGGGTTTGGTCGGATACTGTGCAGAAGGAGCTCAAAGGATGCTCGTTTATGAATATGTTGACAATGGAAATTTGGAGCAGTGGTTGCATGGTGAAATAGGGCCTGTTAGCCCCTTGACATGGGATATACGAATGAGGATCGCCATAGGGACAGCAAAAGGGCTAGCCTATTTGCATGAAGGGTTAGAACCCAAAGTTGTGCACCGAGATGTGAAGTCCAGTAACATACTTTTGGACAAAAGATGGAATGCCAAAGTATCAGACTTTGGACTGGCCAAGCTCTTAGGATCTGAGAAGAGCTATGTGTCTACACGCGTAATGGGTACATTTGGATATGTTTCGCCTGAGTACGCAAGCACCGGTATGCTTAACGAGGGTAGTGATGTGTATAGCTTTGGAGTTCTACTCATGGAGATAATCACTGGAAGAAGCCCCGTTGATTATTCTAGACCTCCTGCTGAGATGAACTTAGTTGATTGGTTTAAGGGAATGGTAGCAAGTCGTCGTGGTGATGAACTTGTTGATCCTTTGATTGAGATTCAGCCCTCTCCAAGATCTTTGAAGCGAGCTTTGCTGGTTTGTCTGCGCTGCATAGATTTGGATGTCAATAAGCGACCAAAGATGGGTCAAATTGTTCATATGCTTGAGGCAGATGATTTCCCCTTTCGTTCTGAACTTCGTCCAATTAGGGAGAAAGATCCTGTTCCTTCTCATGCAGCTGTTTCCAGTAAAAGTTCTTATCCACCAAATCATGTGGAGTCAGTAGAAAGATCAAGATGGAGCTGA 1428 0.4552 MSTSVSEDSSSNVLHELTNTTPFLGLKLYIVICVFLVIVLVLVLLIFIFLCIRRNRSSTKPKMRVKHSSGTIPLVSKEIVEVKALDLIPLDLIRDCENTELKIEDVNPRKEAEAEEIKVEFERRRKSCEESDVAVEAPNIGWGRWYSLKELNLATRDFVDENVIGEGGYGIVYRGVLHDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVKHKNLVGLVGYCAEGAQRMLVYEYVDNGNLEQWLHGEIGPVSPLTWDIRMRIAIGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKRWNAKVSDFGLAKLLGSEKSYVSTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPVDYSRPPAEMNLVDWFKGMVASRRGDELVDPLIEIQPSPRSLKRALLVCLRCIDLDVNKRPKMGQIVHMLEADDFPFRSELRPIREKDPVPSHAAVSSKSSYPPNHVESVERSRWS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g0235 475 ProSitePatterns Protein kinases ATP-binding region signature. 164 186 IPR017441 GO:0005524
Glsi01g0235 475 SUPERFAMILY Protein kinase-like (PK-like) 142 445 IPR011009 -
Glsi01g0235 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Glsi01g0235 475 ProSiteProfiles Protein kinase domain profile. 158 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0235 475 Pfam Protein kinase domain 159 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0235 475 SMART serkin_6 158 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g0235 475 Gene3D Transferase(Phosphotransferase) domain 1 234 438 - -
Glsi01g0235 475 Gene3D Phosphorylase Kinase; domain 1 117 233 - -
Glsi01g0235 475 FunFam Putative receptor-like serine/threonine-protein kinase 234 444 - -
Glsi01g0235 475 PIRSF TyrPK_CSF1-R 2 67 - -
Glsi01g0235 475 PIRSF TyrPK_CSF1-R 163 250 - -
Glsi01g0235 475 PIRSF TyrPK_CSF1-R 248 458 - -
Glsi01g0235 475 PANTHER OS01G0323000 PROTEIN 13 451 - -
Glsi01g0235 475 CDD STKc_IRAK 164 430 - -
Glsi01g0235 475 FunFam Probable serine/threonine-protein kinase At1g01540 138 233 - -
Glsi01g0235 475 MobiDBLite consensus disorder prediction 447 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g0235 Glsi-ChrGlsi01 1883410 1887083 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g0235 138 430 Receptor kinase-like Gene Family AT4G02010 47.811 4.83e-91 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Glsi01g0235 Pkinase 1.4e-45 CL0016