LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi01g0231	ATGGTGGATCGGAGAAGCATAGTGTCTCTTGGGTTCCTGTTCTCGTTGCTGTTTCAGTTCACATTTGAACAGATTGAGCCACTGAGTTCGTCCACAGAGCTTGCTGCACTCTTTGACCTTAGATCGTCTCTGGGCTTGAGGAGCAAGGAATGGCCAAGAAAGGCCGACCCTTGCTCAATCTGGAATGGCATCTCCTGCGAGAATGGCAGAGTTGTTGGGATCAATATCTCTGGGTTTAGAAGAACCCGAATTGGGAAGCAAAACCCACAATTTGCAGTCGACGCCTTGACCAATTTGACGCTTTTGCAGTCGTTCAATGCCTCCAAATTTCTGCTTCCCGGTCCTATTCCGGACTGGTTTGGCCTACAGCTCCCTTCCCTGCGAGTGCTTGATCTTCGGTCTTGCTCTCTGGGAGATCTTAGTAGCTTGGTTGACCTTGATCTTAGTGAAAATTCTTTGTCTGGTGTGGTGCCTCCGGATTTAAGAGGGCTGAGAAGCTTACAAAGAATGATACTAGGGAACAACGTACTTAATGGACCTTTGCCGGAGAACTTCTTTCCTACTCCATCACAGTTGCAGTTCATAGTGCTGAGACAAAACAATTTTACTGGTGCTTTGCCTGATGTGTTGTGGTCTCTGCCAAGATTGAGCTTCCTCGACCTCTCTGGCAATAACTTCACTGGTGTGCTTCCAAATTCTAGTTCCACTCCTAATATTACTGCTGCTGAGCTCAATATTTCTCATAATATGTTTTATGGAGGCCTTAGTCCTCTTCTCAGAAGGTTCAGTTTCATTGATCTGTCAAGCAATTATTTTGAGGGCAACGTTTTGGCTTTAATGCCCAATGCTTCTCTAGACACCAACTGCCTCCAAAATGTGTCAAATCAGAGGACTACAGTAGAATGTGCATCATTTTATGCTGAGAGGGGCCTCACTTTTGATAATTTTGGCCGGCCAAATTCAACAGGACCTCCTGCAGCAGGCAGCTCTGGGAAGAGCAACAGGCGCAAGATTATATTGGCTGGAGTCTTGGGTGGAATCGGTTTAGCTTTAATTTTGTTGTTGTTACTGGTACTGTTGCTTCTTTGTACTCGTAAGAGTGGTAATTCAAATCAAAGAGGGGTTGGTGTGGGCCCTGCTCCTGCTGGGAGTAGCCCTACACCTCCTGGTGTATCAATCAGTTTTATAAATATAGGAGACTCTTATACATTTCAGCAGCTGCTCCAGGCCACGGGCGATTTTGGTGATGCAAATCTTATAAAACATGGCCACAGTGGGGATCTCTTCAGCGGTGTTTTGGAAACTGGTATCCCTGTAGTCATCAAAAGGATTGATGTTCGTTCAACTAAAAAGGATTCTTACCTATTGGAATTGGACTTTTTCAGTAAGATTTCTCATACAAGATTTGTTCCCCTGCTGGGTCATTGCTTAGAAAATGATAACGAGAAATTCCTGGTTTATAAACATATGCCTAATGGGGACTTGTTGAATAGTTTGTACTATAGAAAAACTACATCTGAAGATGGTACTTTGCAGTCAATGGACTGGATAACAAGGTTGAAAATTGCTATTGGAGCAGCAGAGGCCCTATCCTATCTGCATCATGAGTGTAATCCACCCTTTGTTCATAGAGATATTCAAGCAAGCAGTATACTTCTAGATGATAAATATGAAGTTCGGTTAGGGAGTCTAAGTGAAGTCTGCACTCAAGAAGGGGACATTCATCAAAGTAAAATTACAAGGTTGCTAAGGTTGCCCCAGTCCTCTGAACAAGGCACATCTGGTTCATCGACATCAACTTGTGCCTATGATGTGTATTGCTTTGGGAAAGTATTGCTTGAGCTGGTGACCGAGGAAGTATGGGCAATGGCCATTGTTGCCAGGTCTTGCCTAAATCCCAAACCTTCAAGACGACCCTTAATGAGATATGTTCTCAAGGCTTTAGAAAACCCTTTAAAAGTTGTAAGGGAAGAAGGTTCTAGTTCTGCACGGCTTAGAACAACCTCTTCTCGGGGCTCTTGGAATGCTGCGTTGTTTGGTAGTTGGCGTCAGAGTTCATCTGATGGAACGGGAATCCCAGCAGCCTCTACAAAAGTAGAAGCAGGAAGTAGTTTAAAGCATTCAGGAACTACTGGCTCACAGAGTAGCAACCACAATGGTGGGGGTTCGTCATCTCGTAGGCGGCATTCAAAGGATATATTTCCTGAACCTTCTAACGTTCAAGATGTAGAAAGGCTGGAGTAG	2244	0.4439	MVDRRSIVSLGFLFSLLFQFTFEQIEPLSSSTELAALFDLRSSLGLRSKEWPRKADPCSIWNGISCENGRVVGINISGFRRTRIGKQNPQFAVDALTNLTLLQSFNASKFLLPGPIPDWFGLQLPSLRVLDLRSCSLGDLSSLVDLDLSENSLSGVVPPDLRGLRSLQRMILGNNVLNGPLPENFFPTPSQLQFIVLRQNNFTGALPDVLWSLPRLSFLDLSGNNFTGVLPNSSSTPNITAAELNISHNMFYGGLSPLLRRFSFIDLSSNYFEGNVLALMPNASLDTNCLQNVSNQRTTVECASFYAERGLTFDNFGRPNSTGPPAAGSSGKSNRRKIILAGVLGGIGLALILLLLLVLLLLCTRKSGNSNQRGVGVGPAPAGSSPTPPGVSISFINIGDSYTFQQLLQATGDFGDANLIKHGHSGDLFSGVLETGIPVVIKRIDVRSTKKDSYLLELDFFSKISHTRFVPLLGHCLENDNEKFLVYKHMPNGDLLNSLYYRKTTSEDGTLQSMDWITRLKIAIGAAEALSYLHHECNPPFVHRDIQASSILLDDKYEVRLGSLSEVCTQEGDIHQSKITRLLRLPQSSEQGTSGSSTSTCAYDVYCFGKVLLELVTEEVWAMAIVARSCLNPKPSRRPLMRYVLKALENPLKVVREEGSSSARLRTTSSRGSWNAALFGSWRQSSSDGTGIPAASTKVEAGSSLKHSGTTGSQSSNHNGGGSSSRRRHSKDIFPEPSNVQDVERLE	747

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi01g0231	747	ProSiteProfiles	Protein kinase domain profile.	414	747	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi01g0231	747	FunFam	Predicted protein	384	489	-	-
	Glsi01g0231	747	Pfam	Protein tyrosine and serine/threonine kinase	420	617	IPR001245	GO:0004672\|GO:0006468
	Glsi01g0231	747	SUPERFAMILY	L domain-like	50	292	-	-
	Glsi01g0231	747	Gene3D	Phosphorylase Kinase; domain 1	393	489	-	-
	Glsi01g0231	747	ProSiteProfiles	Leucine-rich repeat profile.	126	147	IPR001611	GO:0005515
	Glsi01g0231	747	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	490	618	-	-
	Glsi01g0231	747	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At2g16250	188	318	-	-
	Glsi01g0231	747	MobiDBLite	consensus disorder prediction	701	723	-	-
	Glsi01g0231	747	SUPERFAMILY	Protein kinase-like (PK-like)	388	648	IPR011009	-
	Glsi01g0231	747	Gene3D	Ribonuclease Inhibitor	33	136	IPR032675	-
	Glsi01g0231	747	Gene3D	Ribonuclease Inhibitor	137	185	IPR032675	-
	Glsi01g0231	747	Gene3D	Ribonuclease Inhibitor	186	304	IPR032675	-
	Glsi01g0231	747	MobiDBLite	consensus disorder prediction	683	747	-	-
	Glsi01g0231	747	Gene3D	Transferase(Phosphotransferase) domain 1	490	665	-	-
	Glsi01g0231	747	PANTHER	RECEPTOR-LIKE PROTEIN 55	50	650	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi01g0231	Glsi-ChrGlsi01	1848367	1854088	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi01g0231	95	587	Miscellaneous Gene Families	AT2G16250	53.755	5.50e-171	506

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XIV	Glsi01g0231		PK_Tyr_Ser-Thr	3.4e-18	CL0016